Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_K15
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 32 0.44
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 31 1.0
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 31 1.3
06_03_1145 - 28000012-28000022,28000119-28000290,28000381-280004... 29 3.1
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 29 4.1
09_04_0104 + 14626756-14626828,14627658-14627791,14628544-146285... 29 4.1
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363... 29 5.4
01_01_0870 - 6789903-6792251 29 5.4
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 28 7.2
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 28 7.2
03_06_0258 + 32706396-32706821 28 7.2
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 348 SVSYNDEEAEMKFHCNLTIKGKYKAKGQILIVSINGDGDAKIKITDVA 491
S Y+D + ++ F CN+ + GK +I SI G+ KI D A
Sbjct: 4900 SQQYHDNQKDLSFSCNILVLGKIGVGKSTVINSIMGEEKNKINAFDGA 4947
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 261 PVSVDLSVLYLGTEYPSRKSVSSPVQYSSNIPTF 160
PV+ S L+ GTE +RK VSSP Y + PTF
Sbjct: 623 PVNHSSSTLFSGTE-ANRKDVSSPHSYDNVPPTF 655
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +3
Query: 468 KIKITDVALMLKVKFEDVERDGEVYQEVKSYSLDYKNE----GRVTFFLTNLFKGNPEIS 635
K+ D + LK + + E Y+E D+K+E V + LF G PE+
Sbjct: 189 KLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERIDTNGVIIRVKTLFNGYPELI 248
Query: 636 KAVLSFINENWRQLTEEFGKPV-VDELVRLVFEVVKKF 746
+F+ + + +E KPV E + V ++ +F
Sbjct: 249 LGFNTFLPKGYAIKLQEEKKPVDFVEAINFVNKIKNRF 286
>06_03_1145 -
28000012-28000022,28000119-28000290,28000381-28000488,
28000578-28002152
Length = 621
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 620 PFEQIRQEKCNSSLVFIIQRVAFNFLINLAISFHVFKFN 504
PF QIR+EKC + VFI++++ L N+ +FN
Sbjct: 491 PFSQIREEKCRNG-VFILEKIKLK-LNNVPTDISSSEFN 527
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = -3
Query: 290 TPRKLHDHFILFQWIYRFYI*GRNTLRENRYRLLYSILQTFRLLPGAYFN-------EIR 132
+PR + D ++L + + N +EN YR Y +T + P Y N +I+
Sbjct: 763 SPRGVVDTYVLNAYAKKIANDQNN--KENEYRNFYFFHRTSLIFPCLYDNHWFVFTVDIK 820
Query: 131 GYSSVTLIAIYSEKYRNCKKI 69
G+ V L +IY E + KKI
Sbjct: 821 GHHFVFLDSIYDENNKYHKKI 841
>09_04_0104 +
14626756-14626828,14627658-14627791,14628544-14628593,
14628684-14628776,14628897-14628988,14629279-14629385,
14631536-14631712,14631808-14632476
Length = 464
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 325 PVTVPFKSSTLK-PPGSSTTTLSCFSGSIGSIF 230
PVT+PFK+ TL+ G+++ LS G I SI+
Sbjct: 341 PVTLPFKTQTLQHMSGATSLLLSITPGIINSIY 373
>01_05_0754 +
24933860-24934031,24936035-24936104,24936192-24936316,
24936539-24936677,24936926-24937022,24937105-24937170,
24937478-24937616,24938149-24938258,24938355-24938459,
24938579-24938686
Length = 376
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +3
Query: 132 PDFIKICPGQKSECLKNTVQETIPIFSKGIPSLNIEPIDPLKQDKVVVELPG 287
P +++ P + + + + + IF+KG+P+ N+ + V +E+PG
Sbjct: 159 PPMVEVKPKYRHDFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPG 210
>01_01_0870 - 6789903-6792251
Length = 782
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 555 SYSLDYKNEGRVTFFLTNLFKGNPEISKAVLSFINENWRQLTEEFGKPVVDELVRLVFEV 734
+Y+ NEG V L + +GN + + ++ W EE +P + ++VR++ V
Sbjct: 686 TYAAVQMNEGDVLCLLDSRLEGNANVKELDITCRVACWCIQDEENDRPSMGQVVRMLEGV 745
Query: 735 VKKFFTSIP 761
V IP
Sbjct: 746 VDMEMPPIP 754
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 312 GTVTGFRNCIVDSVSYN-DEEAEMKFHCNLTIKG 410
GTV + C D + Y+ D E+ +K+H NLT +G
Sbjct: 381 GTVDEWVRCHDDGLPYSQDIESSIKYHQNLTSRG 414
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 28.3 bits (60), Expect = 7.2
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +3
Query: 312 GTVTGFRNCIVDSVSYNDEEAEMKFHCNLTIKGKYKAKGQILIVSINGDGDAKIK-ITDV 488
GTV ++ C D + D ++ +++H +LT +G Y++ LI S GD D I I
Sbjct: 313 GTVPSWQRCNYDILYTYDIKSSVRYHLDLTTRG-YRS----LIYS--GDHDMIIPFIGTQ 365
Query: 489 ALMLKVKFEDVER------DGEVYQEVKSYS 563
A + + F V+ DG+V ++SYS
Sbjct: 366 AWIRSLNFSVVDEWRPWFVDGQVAGYIRSYS 396
>03_06_0258 + 32706396-32706821
Length = 141
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 331 LKPVTVPFKSSTLKPPGSSTTTLSCFSGSIGSIFRDGIPFEKIGI 197
+KP VP SS+ P SST L+ + G+ R P +K GI
Sbjct: 52 VKPFFVPSSSSSWICPSSSTRLLASWIWRCGADGRQSEPLKKRGI 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,746,988
Number of Sequences: 37544
Number of extensions: 345555
Number of successful extensions: 1057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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