Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K15
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    79   5e-17
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.2  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   5.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 79.0 bits (186), Expect = 5e-17
 Identities = 53/212 (25%), Positives = 106/212 (50%), Gaps = 8/212 (3%)
 Frame = +3

Query: 165 SECLKNTVQETIPIFSKGIPSLNIEPIDPLKQDKVVV-ELPGG--FKVELLNGTVTGF-R 332
           ++C+   V++ +   + G+ S  I PI+PL  D V + E  G    + E  N  + G  +
Sbjct: 41  NQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTK 100

Query: 333 NCIVDSVSYNDEEAEMK---FHCNLTIKGKYKAKGQILIVSINGDGDAKIKITDVALMLK 503
           N  + + + + ++  +    ++  +     YK +G++L++ + G G + I + D+     
Sbjct: 101 NLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHND 160

Query: 504 VKFEDVERDGEVYQEVKSYSLDYKNEGRVTFFLTNLFKGNPEISKAVLSFINENWRQLTE 683
           +  E  E++GE Y  +K +++ + N  +V     NLF GN E+ + +  FINEN   L +
Sbjct: 161 IYCEKYEKNGETYLRIKKHAVKF-NPAKVKLRFENLFDGNKELGEQMNRFINENSELLFK 219

Query: 684 EFGKPVVDELVRLVF-EVVKKFFTSIPXKELF 776
           E  +   +E   LVF ++  + F  +P  ++F
Sbjct: 220 EL-QAAYEETFSLVFTKIDNEIFNRVPFDKIF 250


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 306 RVPL*NPPEAPRPLYPVSVDLSVLYLGTEYP 214
           ++P   PP AP+ L    VD S ++L    P
Sbjct: 311 KMPCTQPPSAPQNLTVNFVDQSTVFLSWNAP 341


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 239  FYI*GRNTLRENRYRLLYSILQT 171
            FY+ G  T+ E+ Y+ L  I+QT
Sbjct: 1069 FYVCGDCTMAEDVYQTLKHIIQT 1091


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 525 RDGEVYQEVKSYSLDYKNEGRVTFFLTNLFKGNPEIS 635
           +DG    +   + LDY    ++TFF        PEI+
Sbjct: 19  KDGARIVKASHFELDYMLGRKITFFCMATGFPRPEIT 55


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 525 RDGEVYQEVKSYSLDYKNEGRVTFFLTNLFKGNPEISKAVLSFINENWRQL 677
           + GE Y   K+Y  D      +TF     +KG P     +   I    R L
Sbjct: 59  QSGE-YDHTKNYPFDVDQWRGMTFVTVPRYKGVPSSLNVISEKIGNGGRLL 108


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 600 LTNLFKGNPEISKAVLSFINENWRQL 677
           + N+FK   +I +  ++F   +W ++
Sbjct: 412 INNIFKNMSQIEREAITFQYTDWEEV 437


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 600 LTNLFKGNPEISKAVLSFINENWRQL 677
           + N+FK   +I +  ++F   +W ++
Sbjct: 412 INNIFKNMSQIEREAITFQYTDWEEV 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,365
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)