Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K13
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    80   3e-16
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    31   0.20 
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    28   1.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    28   1.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   4.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   5.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   7.5  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    26   7.5  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   9.9  

>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 36/86 (41%), Positives = 56/86 (65%)
 Frame = +3

Query: 459 YYVTVIEDTRINKLIGAATLTIEQKFIHNCSLRGRLEDVVVNDTYRGKQLGKLIVVTVSL 638
           YY+ V+ED   + +IG ATL +E+KF+    + G +E+V+V+  ++ K +GKL+V+T+  
Sbjct: 9   YYIIVVEDLESHHVIGTATLFLERKFLRGKGICGHIEEVIVHPDHQRKAIGKLMVLTLIK 68

Query: 639 LAQELGCYKMSLDCKDKLIKFYETLG 716
           LA  L  YK+ LDC D  + FYE  G
Sbjct: 69  LAFSLNSYKVILDCSDSNVGFYEKCG 94


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +3

Query: 546 CSLRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAQELGCYKMSLDCKDKLIKFYETLGYKM 725
           C+L G L+D    + +  +      VV V  LA  LGCY +++  + +++      GYK 
Sbjct: 155 CALAG-LQDDFQPELFGLRASKACAVVLVEFLATRLGCYLLNISSQSQVLDLLAFSGYKF 213

Query: 726 EPGNSNAMNMRFDEP 770
                 +++  F+ P
Sbjct: 214 VGLILTSLSKLFEMP 228


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 304 TALILG*NFAGLLLKSSLFNISGG*R 227
           T L+L    AG  +++SLFN+ GG R
Sbjct: 19  TGLLLALGLAGFAVQTSLFNVDGGHR 44


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = +3

Query: 372 QLLSQLTSVGNITRKQYDDRFTKMKHSGGYYVTVIEDTRINKL 500
           + + ++ +  ++ +     ++T+ K + G Y + +ED +IN L
Sbjct: 395 RFVGRVANATDVVQFYLKKKYTRSKRNDGLYTSAVEDIKINSL 437


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 543 NCSLRGRLEDVVVNDTYRGKQLGKLIVVTVS 635
           N  L   L D VV D  RG+ LG+LI   +S
Sbjct: 576 NIKLSLNLNDYVVVDADRGQDLGRLIAQNLS 606


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 465 VTVIEDTRINKLIGAATLTIEQKFIHNCSL 554
           +TV  D   NK + A T+T+E   IH   L
Sbjct: 629 MTVARDLSYNKRLNAKTVTLEGTVIHKTGL 658


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 237 PEILKRLDFSKSPAKFHPKISAVDP 311
           P +L  LDF  S  + HP + ++DP
Sbjct: 364 PSLLAALDFRSSNEEQHPGLRSLDP 388


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 564 LEDVVVNDTYRGKQLGKLIVVTVSLLAQELGCYKMS---LDCKDKLIKFYETLG 716
           LED+ V   +RGK  G  ++  ++  +  +G  ++    LD   + I+ YE  G
Sbjct: 87  LEDLYVRPQFRGKGYGSYLLSYLARESLRIGGRRLDWVVLDWNQRAIEVYEKAG 140


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 150 SSNKLKKNHKMGMEKXGNAEGKLSEYLYPPEIL 248
           SS   KKNHK+ M+K  + +  + E    P+++
Sbjct: 718 SSKADKKNHKLKMDKVASLQELVEEPKVQPDLI 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,420
Number of Sequences: 5004
Number of extensions: 55823
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)