Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K13
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     91   1e-18
02_05_0531 + 29811356-29811856                                         83   2e-16
05_05_0234 + 23499406-23499418,23499945-23500008,23500641-235008...    40   0.003
03_01_0362 - 2825880-2826563                                           33   0.28 
08_01_0015 - 103399-104001                                             32   0.64 

>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
 Frame = +3

Query: 330 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGG-YYVTVIEDTRINKLIG 506
           +RPL+ +D  +GFL LL+QL+    +T + +  RF ++   G  + V V ED    +L  
Sbjct: 24  IRPLELADISRGFLGLLNQLSPSPPLTEEAFRARFEELAALGADHLVLVAEDAATGRLAA 83

Query: 507 AATLTIEQKFIHNCSLRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAQELGCYKMSLDCKD 686
           A  + +E+KFI  C   G +EDVVV+   RG+ LG+ +V  +   A+  GCYK+ ++C  
Sbjct: 84  AGAVLVERKFIRRCGRVGHVEDVVVDAAARGRGLGERVVRRLVEHARGRGCYKVIINCTP 143

Query: 687 KLIKFYETLGY 719
           +L  FY   G+
Sbjct: 144 ELTGFYAKCGF 154


>02_05_0531 + 29811356-29811856
          Length = 166

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 44/133 (33%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
 Frame = +3

Query: 330 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGGYYVTVI-EDTRI--NKL 500
           +R L+ +D++KGF+ LLSQL++  ++T  ++   F  +   G  +V ++ ED     +++
Sbjct: 23  IRRLEATDHEKGFVALLSQLSACPDLTASEFAACFADLAALGDDHVILVAEDPAAPESRI 82

Query: 501 IGAATLTIEQKFIHNCSLRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAQELGCYKMSLDC 680
           +    L +E+KF+      G +EDVVV+   RG+ LG  +V  +  +A+E GCYK+ LDC
Sbjct: 83  LATGCLFVERKFLRGGGKVGHVEDVVVDAAARGRGLGLRVVRRLVEIAKEAGCYKVILDC 142

Query: 681 KDKLIKFYETLGY 719
             +L  +Y   G+
Sbjct: 143 TPELRAYYAKCGF 155


>05_05_0234 +
           23499406-23499418,23499945-23500008,23500641-23500827,
           23501166-23501248,23501382-23501496,23501576-23501669,
           23502547-23502626
          Length = 211

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 26/96 (27%), Positives = 49/96 (51%)
 Frame = +3

Query: 462 YVTVIEDTRINKLIGAATLTIEQKFIHNCSLRGRLEDVVVNDTYRGKQLGKLIVVTVSLL 641
           Y+T  E+ +  +LIG A  T +  F         + DV+V+ +Y+G+ LGK ++  V   
Sbjct: 118 YLTEGEERK--QLIGMARATSDHAF------NATIWDVLVDPSYQGQGLGKALMEKVIRT 169

Query: 642 AQELGCYKMSLDCKDKLIKFYETLGYKMEPGNSNAM 749
             +     ++L   +K++ FY+ LG++ +P     M
Sbjct: 170 LLQRDISNITLFADNKVVDFYKNLGFEADPQGIKGM 205


>03_01_0362 - 2825880-2826563
          Length = 227

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 564 LEDVVVNDTYRGKQLGKLIVVTVSLLAQELGCYKMS---LDCKDKLIKFYETLGYKMEP 731
           +ED+ V   +R + LG++++  V+  A ELG  ++    LD     I FYE +G ++ P
Sbjct: 140 VEDIFVRAPWRRRGLGRMMLSAVAGKAAELGMGRVEWCVLDWNKNAIDFYEGMGAEVLP 198


>08_01_0015 - 103399-104001
          Length = 200

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 570 DVVVNDTYRGKQLGKLIVVTVSLLAQELGCYKMSLDCKDKLIKFYETLGYKMEP 731
           DVVV  + +G  LG+ ++  +    +  G   ++L  + +++ FY  LG+ M+P
Sbjct: 127 DVVVEPSCQGLGLGRAVMERLVADLRGKGVSNIALYAEPRVVGFYRLLGFAMDP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,281,594
Number of Sequences: 37544
Number of extensions: 356215
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)