Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K12
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            29   0.059
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 606 HMHXDCCFSTILTFSRLCTSLYAFVYGWVQNLLEIYQHPFFQI 478
           H   D      +TF  + T        W+++ +E+Y H FFQ+
Sbjct: 29  HFELDYMLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQV 71


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 401 RYNSCTSANSSSRIRRTVR 457
           R NSC   N+SSR+   +R
Sbjct: 371 RQNSCNIYNASSRMENNLR 389


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 NSNXNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 704
           N N N Y N   K    Y+ NY+  Q P  +P P+   N P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 NSNXNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 704
           N N N Y N   K    Y+ NY+  Q P  +P P+   N P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 NSNXNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 704
           N N N Y N   K    Y+ NY+  Q P  +P P+   N P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 NSNXNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 704
           N N N Y N   K    Y+ NY+  Q P  +P P+   N P
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +3

Query: 552 YKAEKMSELLRNSNXNAYGNGATKPYLP-YSNYLPSQNPQSLPYPVGPLNMP 704
           YK    +    N N N Y N     Y   Y NY+ +     +P PV   N P
Sbjct: 89  YKYSNYNNYNNNYNNN-YNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFP 139


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +3

Query: 552 YKAEKMSELLRNSNXNAYGNGATKPYLP-YSNYLPSQNPQSLPYPVGPLNMP 704
           YK    +    N N N Y N     Y   Y NY+ +     +P PV   N P
Sbjct: 89  YKYSNYNNYNNNYNNN-YNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFP 139


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 585 NSNXNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMP 704
           N N N Y N      L Y+     Q P  +P PV   N P
Sbjct: 97  NYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFP 136


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 585 NSNXNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMP 704
           N N N Y N      L Y+     Q P  +P PV   N P
Sbjct: 97  NYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFP 136


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +3

Query: 495 VDKFLEDFEPIRKQMHIRKYK------AEKMSELLRNSNXNAYGNGATKPYLPYSNYLPS 656
           + KFL+D   ++KQ+H    +       +K+ ELL     N + N  T   +  +N L  
Sbjct: 23  ISKFLKDRPYVQKQLHCILDRGHCDVIGKKIKELLPEV-LNNHCNRCTSRQIGIANTLIP 81

Query: 657 QNPQSLPY 680
              Q+ PY
Sbjct: 82  FMQQNYPY 89


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 292 SNSGSFPKLNSASDLLLAMNISFSVSQ 212
           S   S PKLN ++ L+     +F VSQ
Sbjct: 362 STGSSIPKLNLSTALMSQPPPNFGVSQ 388


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 591 CCFSTILTFSRLCTSLYAFVYGWV 520
           C F     FS L T +Y    GW+
Sbjct: 143 CNFKAYCLFSFLNTIVYCVPAGWI 166


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 435 AESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYK 557
           A +EE+     RD  SGK+G  +    +   R  +  + YK
Sbjct: 590 AYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYK 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,874
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)