Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_K07
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 267 1e-72
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 248 9e-67
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 31 0.18
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 28 1.3
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 1.7
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 28 1.7
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.2
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 26 6.9
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 267 bits (654), Expect = 1e-72
Identities = 130/213 (61%), Positives = 160/213 (75%), Gaps = 1/213 (0%)
Frame = +1
Query: 133 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 312
M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD K+++ GK
Sbjct: 1 MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60
Query: 313 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 492
GVL A+ N+N +IAP + KANL+VT Q+ DE +LKLDGTENKSKLGANAILGVS+
Sbjct: 61 GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120
Query: 493 XXXXXXNVPLYKHLADLAG-NNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFS 669
+PL+K++A+ G VLPVP+FNV+NGGSHAG LA QEFMI PTGA +FS
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180
Query: 670 EAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEXG 768
EAMR G+E YH LK I K+++G + VGDE G
Sbjct: 181 EAMRWGAETYHTLKSIAKKRYGSSAGNVGDEGG 213
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 248 bits (606), Expect = 9e-67
Identities = 119/211 (56%), Positives = 153/211 (72%), Gaps = 1/211 (0%)
Frame = +1
Query: 139 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 318
I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG EA ELRDN K+++ GKGV
Sbjct: 4 IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63
Query: 319 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 498
A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+
Sbjct: 64 TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123
Query: 499 XXXXNVPLYKHLADLAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEA 675
+PLY+++ LAG+ +PVP+FNV+NGG HAG LA QEFMI P A TFSE
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183
Query: 676 MRMGSEVYHHLKKIIKEKFGLDSTAVGDEXG 768
+R GSEVYH LK + K+K+G + VGDE G
Sbjct: 184 LRWGSEVYHTLKALAKKKYGASAGNVGDEGG 214
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 686 PILMASLKVDAPVGKIMNSCMASLFPACDPPLITLKAGTGRTMSL 552
PI+ S + + +G+ +N + LFP+CD LI G T+ L
Sbjct: 192 PIIQTSAPLGSSLGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +1
Query: 169 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 348
D +G +VD ++A +ST LE R N + E V TAI + E
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198
Query: 349 IAPELTKANLEV 384
ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/98 (23%), Positives = 42/98 (42%)
Frame = +1
Query: 115 TSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIK 294
TS V VI++ + G P + ++ LG F + S S + ++ + +
Sbjct: 1088 TSEVTLSVIRARPGLLVKMVDGEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLA 1147
Query: 295 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDE 408
+E H + K +NE +A L + N E T E+ +
Sbjct: 1148 TEIHYAASVGQNKYLNEYVA-SLIRTN-EKTHSTELSQ 1183
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 1.7
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +1
Query: 109 KSTSSVLKMVIKSIKARQIFDSRGNPTV-EVDLVTELGLFRAAVPSGASTGVHEALELRD 285
K +V+K I SIK ++ + +G TV + D+ + G A G T + + D
Sbjct: 172 KGEMAVMKNDIASIKG-EMAEMKGEMTVMKNDIASIKG--EMAEMKGEMTIMKSDI---D 225
Query: 286 NIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 447
++K E KG +T +KN + + E T EVT ++ I +L K+D + +++
Sbjct: 226 SVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 441 FVLSAIQLKHEFINLSLLGYFKVGFG 364
F +S+I+ KH++IN+ Y +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -3
Query: 600 SSIDHIESWYR*NNVIISSQISQVLV 523
+S+++++SWY+ N I++ +SQ L+
Sbjct: 775 ASLENVDSWYQDINEIVNIIVSQRLI 800
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,335
Number of Sequences: 5004
Number of extensions: 57847
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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