Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_K06
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0040 - 353861-353981,354618-354730,355034-355129,355406-35... 72 5e-13
03_02_0258 + 6915645-6915785,6915950-6916020,6916157-6916337,691... 66 3e-11
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 64 1e-10
04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173... 36 0.024
04_04_1145 + 31239317-31239784,31245773-31245916,31246635-312468... 29 2.7
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 29 3.6
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 29 4.8
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975... 29 4.8
05_03_0040 - 7646525-7647775 28 8.3
04_03_0904 + 20717005-20718087 28 8.3
>03_01_0040 -
353861-353981,354618-354730,355034-355129,355406-355522,
356071-356169,356416-356547,356651-356827,356949-357123,
357225-357313,357981-358079
Length = 405
Score = 71.7 bits (168), Expect = 5e-13
Identities = 42/102 (41%), Positives = 56/102 (54%)
Frame = +1
Query: 388 KELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRG 567
+ LGFG TD M + G + K E++PF + + P+A L+Y LFEGLKAYR
Sbjct: 74 ENLGFGLVQTDFMYIAKCGPD-GNFSKGEMVPFGPIELSPSAGVLNYGQGLFEGLKAYRK 132
Query: 568 VDDKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIKRLV 693
D I LFRPE N RM A+R +P E+ V +K+ V
Sbjct: 133 TDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTV 174
>03_02_0258 +
6915645-6915785,6915950-6916020,6916157-6916337,
6916461-6916643,6916753-6916884,6916986-6917084,
6917381-6917593,6917746-6917858,6917959-6918073
Length = 415
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = +1
Query: 394 LGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVD 573
LGFG TD+M + E G + + E+ + N+ + P++ ++Y LFEGLKAYR +
Sbjct: 85 LGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQGLFEGLKAYRAAN 144
Query: 574 DK--IRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIKRLV 693
+ LFRPE N RM A+R +P E+ V +K+ V
Sbjct: 145 QQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTV 186
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/97 (37%), Positives = 55/97 (56%)
Frame = +1
Query: 394 LGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVD 573
LGF TD M + +E G + K E++P+ + ++PAA L+Y L EGL+A+R D
Sbjct: 74 LGFQPVPTDFMYVMRCSEE-GVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLRAHRKED 132
Query: 574 DKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQCIK 684
+ LFRP+ N RM + A R +P E+ ++ IK
Sbjct: 133 GSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIK 169
>04_04_1037 +
30316557-30316692,30317104-30317180,30317287-30317353,
30317761-30317813,30317906-30318322
Length = 249
Score = 36.3 bits (80), Expect = 0.024
Identities = 27/100 (27%), Positives = 47/100 (47%)
Frame = +1
Query: 289 KPHPQITPEISFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQK 468
KP + TP++ ++ D RL P + TPK + +G K T + LK + K G Q
Sbjct: 21 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGM-KGLTLYHLKSHLQKYRLGRQS 79
Query: 469 PEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDDKIRL 588
+ E L + + AL Y +++ L+ V K+++
Sbjct: 80 KKSAGLE-LAVADSGDALKYQVEVQRKLQEQLEVQKKLQM 118
>04_04_1145 +
31239317-31239784,31245773-31245916,31246635-31246875,
31247213-31247713,31247851-31248263
Length = 588
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 362 YGAASRTCKSSYLKEISGVICGCGFCVGDGA 270
YGA ++T K E+ +CG C+G G+
Sbjct: 173 YGAPAQTPKEQMFSELVDKLCGSDECIGSGS 203
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 484 FENLNIHPAAKALHYAIQLFEGLKAYRGVDD 576
F N H A+ LH+A QLFE YRG D
Sbjct: 198 FRKSNPHYASLLLHHAQQLFEFADKYRGKYD 228
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 275 HRPRKSHTHKLHLKSPSSTKTCKYDSRRRISSPRNPK 385
++PR+ H +PS + T + R++ P NPK
Sbjct: 191 NKPRQPQQHSSKRHAPSGSSTPTFGGSSRLAPPSNPK 227
>01_05_0409 -
21896478-21897005,21897098-21897292,21897405-21897542,
21897641-21897728,21897837-21897925,21898032-21898553
Length = 519
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 142 PIRRSQVLVKWIFENQHKLQTIRWCSSSLRYKELEDSVQADHVAPSPTQK----PHPQIT 309
PI S+ KW N ++ +R + L+ LE + V PSPT P P+ +
Sbjct: 406 PIMASRPSFKWATANGARIGCVRDYPADLQSMALEHVNLSPRVVPSPTTNRLPIPSPRPS 465
Query: 310 PEI 318
P+I
Sbjct: 466 PKI 468
>05_03_0040 - 7646525-7647775
Length = 416
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 274 PSPTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKPEAK 390
P P KPHP+ TP+ K E + P PKPE K
Sbjct: 58 PKPKPKPHPKPTPKPEPKPEPEPKPVPEP---EPKPEPK 93
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 274 PSPTQKPHPQITP----EISFKYEDLQVRLAAPYQLTPKP 381
P PT KP P+ TP ++K + PY TPKP
Sbjct: 257 PPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKP 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,981,353
Number of Sequences: 37544
Number of extensions: 430270
Number of successful extensions: 1152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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