Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_K06
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical ... 145 2e-35
Z67883-1|CAA91805.1| 415|Caenorhabditis elegans Hypothetical pr... 137 6e-33
U21550-1|AAC47236.1| 378|Caenorhabditis elegans ECA39 protein. 123 1e-28
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 34 0.11
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 33 0.15
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 28 7.5
AC006714-15|AAK39600.1| 251|Caenorhabditis elegans F-box a prot... 28 7.5
Z92781-3|CAB07182.1| 326|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical
protein Y44A6D.5 protein.
Length = 393
Score = 145 bits (352), Expect = 2e-35
Identities = 71/128 (55%), Positives = 90/128 (70%)
Frame = +1
Query: 319 SFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLN 498
SF+Y +L V + Q P AK LGFG+YF+DHM+ I + + GW P+I PF+N +
Sbjct: 23 SFQYANLVVEKSTKKQRIPSDPAK-LGFGRYFSDHMIDIDWDVK-EGWIAPKICPFQNFS 80
Query: 499 IHPAAKALHYAIQLFEGLKAYRGVDDKIRLFRPELNMERMNLAAQRSGLPMFDGEELVQC 678
IHPAAK LHYAI++FEG+KAY GVD KIRLFRPELNMERM +A+RS LP FD +
Sbjct: 81 IHPAAKVLHYAIEIFEGMKAYHGVDGKIRLFRPELNMERMRRSARRSSLPDFDARQACLL 140
Query: 679 IKRLVQID 702
I L++ID
Sbjct: 141 IDELIRID 148
>Z67883-1|CAA91805.1| 415|Caenorhabditis elegans Hypothetical
protein K02A4.1 protein.
Length = 415
Score = 137 bits (332), Expect = 6e-33
Identities = 64/142 (45%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Frame = +1
Query: 280 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 456
P ++ H + + +F + DL+++LA P QL KP + +L FG + D+M+ + E G
Sbjct: 31 PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWDAERG 90
Query: 457 GWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDDKIRLFRPELNMERMNLAAQR 636
W P+I P L IHP AK LHYA +LFEG+KAYRG+D+KIR+FRPE+NM RM A R
Sbjct: 91 -WHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALR 149
Query: 637 SGLPMFDGEELVQCIKRLVQID 702
+ LP FD EE++ + L+++D
Sbjct: 150 AALPDFDSEEMINVLTELLRLD 171
>U21550-1|AAC47236.1| 378|Caenorhabditis elegans ECA39 protein.
Length = 378
Score = 123 bits (297), Expect = 1e-28
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Frame = +1
Query: 280 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 456
P ++ H + + +F + DL+++LA P QL KP + +L FG + D+M+ + E G
Sbjct: 11 PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWIAERG 70
Query: 457 GWQKPEIMPFENLNIHPAAKALHYAIQLF-EGLKAYRGVDDKIRLFRPELNMERMNLAAQ 633
W P+I P L IHP AK LHYA +LF EG+KAYRG+D+KIR+FRPE+NM RM A
Sbjct: 71 -WHHPKIEPIGELKIHPGAKVLHYASELFSEGMKAYRGIDNKIRMFRPEMNMARMKRTAL 129
Query: 634 RSGLPMFDGEELVQCIKRLVQID 702
R+ LP+F QC R+++ D
Sbjct: 130 RAALPVFRLRGDDQCTYRILRSD 152
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 33.9 bits (74), Expect = 0.11
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +1
Query: 130 NFKMPIRRSQVLVKWIFENQHKLQTIRWCSSSLRYKELED----SVQADHVAP-SPTQKP 294
N + I + ++ FENQ K Q+I K L D S+QA V+ +PT
Sbjct: 337 NIRQKITDASRIISTNFENQRKEQSIVVQQQVDELKVLPDLTDSSIQARSVSVVAPTAPT 396
Query: 295 HPQITPEISFKYEDLQVRLAAPYQLTPKPEAKELGFGKYF 414
HPQ+ P+++ QV L Q+ P+ + + + ++
Sbjct: 397 HPQVAPQVA-----PQVALQTAQQVAPQVQQPQQPYNNFW 431
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 244 EDSVQADHVAPSPTQKPHPQITPEISFKYEDLQVRLAAPYQLTPK 378
E++ HV P PT+K ++TP++ +++ AP+ + P+
Sbjct: 436 EETTTKSHVVPKPTKKGTVKVTPKLELSFDEPTEITKAPHPVKPR 480
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 202 TIRWCSSSLRYKELEDSVQ-ADHVAPSPTQKPHPQITP 312
TI C + L Y +L + +HV P KP P TP
Sbjct: 813 TINRCPAGLFYSKLNNRCDYKEHVEDCPEYKPTPSTTP 850
>AC006714-15|AAK39600.1| 251|Caenorhabditis elegans F-box a protein
protein 91 protein.
Length = 251
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 675 LNELFSVEHWQAGPLGCEVHPFHVKFRPEQSY 580
+ EL+S+E W+ P+H+ F PE+ +
Sbjct: 177 VKELYSMEQWKQAKKKRSNVPYHILFEPEKIF 208
>Z92781-3|CAB07182.1| 326|Caenorhabditis elegans Hypothetical
protein F09C3.4 protein.
Length = 326
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 144 RHFKIH*YI*LHLKTLINHTEHYYTFFMI 58
+H KIH ++ +L LINH H++T ++
Sbjct: 224 QHLKIHSFV--NLDPLINHISHFHTIQLL 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,326,474
Number of Sequences: 27780
Number of extensions: 367168
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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