Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K04
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   4.3  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   4.3  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   5.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.7  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 120 EDTLRLLEEHDLNYRRLTVRGLLGRAKRVLSMT 218
           EDT  +  E    YR LT+ GL+G     +S T
Sbjct: 319 EDTKAITPEQAKLYRHLTIVGLVGSIDNDMSST 351


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 72  DDKEDTGFGFKDKAKAEDTLRLLEE 146
           + +   GFGF   A AED  R +EE
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEE 277


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 75  DKEDTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGL 185
           +KED     KD+A     L +L+ H+ N R+ T+  L
Sbjct: 45  EKEDFNTTAKDQAYFAHLLGMLKHHNANQRQETLEKL 81


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 108  KAKAEDTLRLLEEHDLNYRRLTVRGL--LGRAKRVLS 212
            K   + TLR +  +  +YRRL+V GL  LGR  R+L+
Sbjct: 1384 KELLQTTLRPILYNISDYRRLSVAGLEGLGRLLRLLT 1420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,226
Number of Sequences: 5004
Number of extensions: 8779
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)