Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_K04
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    31   0.46 
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    27   7.4  

>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 69  KDDKEDTGFGFKDKAKAEDTLRLLEE-HDLNYRRLTVRGLLGRAKRVL 209
           K+ KE+ GF F +    E   R +EE HD  ++  T+R  L +AK  L
Sbjct: 139 KETKENKGFAFVNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRL 186


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 69  KDDKEDTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGRAK 200
           K   +DT  G KD  ++  T+ L  + D+N +    R +LG+AK
Sbjct: 235 KVKSKDTSKGNKDNGQSGRTISLDTKKDVNLKYKDDRLILGKAK 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,235,686
Number of Sequences: 37544
Number of extensions: 58305
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)