Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J24
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   133   1e-31
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   3e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   1e-08
04_04_0303 + 24269467-24270741                                         31   0.44 
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384...    31   0.58 
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    27   7.1  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   9.4  
01_01_0125 - 1154626-1154685,1155100-1155195,1155578-1155652,115...    27   9.4  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  133 bits (321), Expect = 1e-31
 Identities = 58/78 (74%), Positives = 65/78 (83%)
 Frame = +3

Query: 78  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 257
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 258 QPTGGRARLTEGCSFRRK 311
           QPTGG+ARLTEGCSFRRK
Sbjct: 67  QPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +3

Query: 78  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 215
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 78  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 194
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 75  AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 254
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 255 CQPTGGRA 278
           C  TG  A
Sbjct: 198 CSATGAGA 205


>03_04_0023 +
           16537257-16537272,16537515-16537929,16538404-16538466,
           16538604-16538607
          Length = 165

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 116 PPLRRRGRMQQINCERHGYSFNAQPEKERRSEYQRQV 6
           PP ++R + Q    +RHG   NA P +E   E Q Q+
Sbjct: 75  PPQQQRRQQQLRRRQRHGLFVNAAPHEEEEEEQQLQL 111


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 57  AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 212
           AV   L   L+  + ASERRK K+  L    N   + +     YK   V SH
Sbjct: 51  AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 275
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>01_01_0125 -
           1154626-1154685,1155100-1155195,1155578-1155652,
           1155729-1155831,1155986-1156078,1156774-1156886,
           1156981-1157124,1157247-1157357
          Length = 264

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 106 DAGEGCNKSIASGMVTALMHNRKRKGVQS 20
           DAG+GCN   + G   +L  + +R+ + S
Sbjct: 94  DAGDGCNSGFSEGQSVSLEVDAERRNLNS 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,920
Number of Sequences: 37544
Number of extensions: 232487
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)