Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_J21
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 150 2e-37
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 128 6e-31
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 112 5e-26
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 105 8e-24
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 103 2e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 97 3e-21
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 91 2e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 90 3e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 87 3e-18
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 86 4e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 86 5e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 86 5e-18
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 84 2e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 80 4e-16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 79 8e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 77 2e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 76 4e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 74 2e-14
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 73 5e-14
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 67 2e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 63 4e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 4e-09
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 37 0.003
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 34 0.018
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 31 0.12
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 30 0.29
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 29 0.50
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual 29 0.88
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.0
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 150 bits (363), Expect = 2e-37
Identities = 72/171 (42%), Positives = 115/171 (67%), Gaps = 1/171 (0%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F + LD R+ +AI + + +PT +Q IPL LEGKD++ +ARTGSGKTAA+ +P+++
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 388 ILNLKNTSKHQ-SIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKA 564
+L K ++Q I AL+L P++EL Q+ +V+ LT C++ +R I+++ N Q+
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 565 ILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+L D PDIV+ATPSR +VH+ + + L + L LV+DEADL+ S GY +++
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPL-DKLKFLVIDEADLMLSFGYNEDM 185
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 128 bits (310), Expect = 6e-31
Identities = 76/179 (42%), Positives = 107/179 (59%)
Frame = +1
Query: 181 KMTDEKKVMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTA 360
K + K F M L+ +L+AI + G+ PT IQ IPLLLEG+DV+ ARTGSGKTA
Sbjct: 62 KKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTA 121
Query: 361 AFAVPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISAN 540
AF +P+I+ +LK+T + + RALILSP++EL Q V+ D + ++R + I
Sbjct: 122 AFVIPMIE---HLKSTLANSNTRALILSPNRELALQTVKVVKDFS--KGTDLRSVAIVGG 176
Query: 541 GDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+ Q ++LS KPDIVVATP R L HLK + +V DEAD +F G+ ++
Sbjct: 177 VSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQL 234
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 112 bits (269), Expect = 5e-26
Identities = 66/170 (38%), Positives = 98/170 (57%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F M L ILK +S LG+ PT IQ+ IPL L GKD++ A TGSGKTAAF VP++++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 388 ILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAI 567
+ L K + R LIL P++EL Q SV + + C+ I + Q+
Sbjct: 321 L--LYRPKKVPTTRVLILCPTRELAMQCHSVATKIA-SFTDIMVCLCIGGL-SLKLQEQE 376
Query: 568 LSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
L +PDIV+ATP R + H++ + E++ ++V+DEAD + G+ DE+
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL 426
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 105 bits (251), Expect = 8e-24
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 1/171 (0%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F +++L + I KAI ++G+ T IQ+ +IP LL G+DVL A+TGSGKT AF +P I+
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 388 ILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDI-SANGDTQTQKA 564
+ LK ++ +I+SP++EL QI V +L +K + I I AN + K
Sbjct: 151 LYALKFKPRN-GTGVIIISPTRELALQIFGVAKEL-LKYHHQTFGIVIGGANRRAEADKL 208
Query: 565 ILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+ +++VATP R L HL+ + +L LV+DEAD I G+EDE+
Sbjct: 209 VKG--VNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEM 257
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 103 bits (248), Expect = 2e-23
Identities = 65/172 (37%), Positives = 99/172 (57%)
Frame = +1
Query: 190 DEKKVMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFA 369
+E F E+ + D + +A +LG+ PT IQ+ AIP++L +DV+ A+TGSGKTAAFA
Sbjct: 42 NEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFA 101
Query: 370 VPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDT 549
+PVIQ++ N N S A++L+P++EL QI+ I + VR + I D
Sbjct: 102 LPVIQELWN--NPS---PFFAVVLAPTRELAYQISEQFE--AIGGSIGVRSVVIVGGMDM 154
Query: 550 QTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGY 705
TQ LS KP ++V TP R + HL+ ++L L++DEAD + +
Sbjct: 155 VTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDF 206
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 3e-21
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 3/173 (1%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPV--- 378
+ E L +LK + ++ + EP+ IQ AIP+LL+ KD++ A TGSGKTAAF +P+
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 379 IQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQ 558
I K+ L ++ H A++L+P++EL QI V G+ + RC+ + + Q
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQI-QVEGNKFAE-PLGFRCVSVVGGHAFEEQ 368
Query: 559 KAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+S IVVATP R L L+ L + + +V+DEAD + G+ED++
Sbjct: 369 SFQMSQGAHIVVATPGRLLDCLERRLFVLSQ-CTYVVMDEADRMLDMGFEDDV 420
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 90.6 bits (215), Expect = 2e-19
Identities = 64/177 (36%), Positives = 95/177 (53%), Gaps = 1/177 (0%)
Frame = +1
Query: 190 DEKKVMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFA 369
DE F +M L +L+ I G+ P+ IQ+ AI +L +DVL +A++G+GKTA F+
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFS 74
Query: 370 VPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDT 549
+ V+QKI +TS Q +ALIL+P++EL QI V+ + + V C
Sbjct: 75 ISVLQKI----DTSLKQ-CQALILAPTRELAQQIQKVV--VALGDLMNVECHACIGGTLV 127
Query: 550 QTQKAILSDKPDIVVATPSRALVHLKANNMRLKED-LSMLVVDEADLIFSXGYEDEI 717
+ A L +VV TP R VH L D + M V+DEAD + S G++D+I
Sbjct: 128 RDDMAALQAGVHVVVGTPGR--VHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQI 182
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 90.2 bits (214), Expect = 3e-19
Identities = 54/171 (31%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F EM L + +L+ I G+ P+ +Q AI + +G+DV+ +A++G+GKTA F++ ++Q
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 388 I-LNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKA 564
I L++++T +ALILSP++EL QI +V+ L + V+C
Sbjct: 83 IDLSVRDT------QALILSPTRELAVQIQNVV--LALGDHMNVQCHACIGGTSVGNDIK 134
Query: 565 ILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
L +V TP R ++ N+R + ++ ML++DEAD + + G++++I
Sbjct: 135 KLDYGQHVVSGTPGRVTDMIRRRNLRTR-NVKMLILDEADELLNQGFKEQI 184
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 86.6 bits (205), Expect = 3e-18
Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 1/166 (0%)
Frame = +1
Query: 223 LDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLK 402
L +L ++S+ G+ +P IQ IP G D++ +A TGSGKT AF +P+++ L+
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC--LR 186
Query: 403 NTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAILSDKP 582
N + ++AL+++P++EL QI IK + +R + I+ Q Q+ +L+ P
Sbjct: 187 NVDA-KYVQALVVAPTRELAHQICQHFE--LIKPSPNIRVMSITGGLAVQKQQRLLNKHP 243
Query: 583 DIVVATPSRALVHLKANNMRLK-EDLSMLVVDEADLIFSXGYEDEI 717
+VVATP R + NN+ + + LV+DEAD + + +E+
Sbjct: 244 HVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEEL 289
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 86.2 bits (204), Expect = 4e-18
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Frame = +1
Query: 184 MTDEKKVMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAA 363
+T + F + L +L I + G+ P+ IQE +IP+ L G+D+L RA+ G+GKTAA
Sbjct: 38 VTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAA 97
Query: 364 FAVPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANG 543
F +P ++K+ +K I+ LIL P++EL Q + V T+ V+ + ++ G
Sbjct: 98 FVIPSLEKV-----DTKKSKIQTLILVPTRELALQTSQVC--KTLGKHMNVK-VMVTTGG 149
Query: 544 DTQTQKAI-LSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFS 696
T I L+D IVV TP R L L + + + V+DEAD + S
Sbjct: 150 TTLRDDIIRLNDTVHIVVGTPGRVL-DLAGKGVADFSECTTFVMDEADKLLS 200
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 85.8 bits (203), Expect = 5e-18
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Frame = +1
Query: 223 LDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLK 402
L + + I+ LG+ +PT IQ AIP + G+DV+ A+TGSGKT AF +P+ + I + +
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 403 NTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAILSDKP 582
+ A+I++P++EL QI +K +R + Q A L
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPF-LKLL-NIRACCAYGGAPIKDQIADLKRGA 542
Query: 583 DIVVATPSRALVHLKANNMRLK--EDLSMLVVDEADLIFSXGYEDEI 717
+IVV TP R + L AN R+ + LV+DEAD +F G+E ++
Sbjct: 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQV 589
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 85.8 bits (203), Expect = 5e-18
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 4/182 (2%)
Frame = +1
Query: 184 MTDEKKVMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAA 363
M++ + F ++ + ++ + L EPT IQE I +LEG++ + A+TGSGKTAA
Sbjct: 1 MSEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAA 60
Query: 364 FAVPVIQKILNLKNTSKHQS-IRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISAN 540
FA+P+I+K SK S I ALIL+P++EL QI L ++ I
Sbjct: 61 FALPIIEK------WSKDPSGIFALILTPTRELAIQIDEQFAALGANL--NLKHALIVGG 112
Query: 541 GDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDL---SMLVVDEADLIFSXGYED 711
D Q LS +P +VVATP R +++N L LV+DEAD + S + D
Sbjct: 113 MDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD 172
Query: 712 EI 717
++
Sbjct: 173 DL 174
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 84.2 bits (199), Expect = 2e-17
Identities = 51/180 (28%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Frame = +1
Query: 196 KKVMFHEMELDDRILKAIS-QLGWPEPTLIQETAIPLLL--EGKDVLMRARTGSGKTAAF 366
K F ++LD ++ ++ ++ PT IQ +P LL + KD + A+TGSGKT A+
Sbjct: 136 KTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAY 195
Query: 367 AVPVIQKILNL-KNT-SKHQSIRALILSPSKELCGQITSVIGDLTIK-CAREVRCIDISA 537
+P++Q+++ L KN ++ I A+I++P++ELC QI +V L + + ++
Sbjct: 196 LLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIG 255
Query: 538 NGDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+++KA + +I++ TP R HL+ + +V+DE D + G+E+ +
Sbjct: 256 GEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETL 315
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 79.8 bits (188), Expect = 4e-16
Identities = 53/170 (31%), Positives = 83/170 (48%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F E + +LK + QLG+ PT IQ+ A P+ + G+D++ + TGSGKT ++ +P I
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 388 ILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAI 567
I S L+L+P++EL QI C+ Q + I
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 568 LSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+I +ATP R L L +N L+ ++ LV+DEAD + G+E +I
Sbjct: 244 RG--VEICIATPGRLLDMLDSNKTNLRR-VTYLVLDEADRMLDMGFEPQI 290
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 78.6 bits (185), Expect = 8e-16
Identities = 56/166 (33%), Positives = 84/166 (50%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F E+ L A+ + T IQ+ IP L+G+D+L A+TGSGKT AF VP+I+
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 388 ILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAI 567
+ K TS + AL++SP++EL Q + + I I + + +K
Sbjct: 101 LYRKKWTSL-DGLGALVISPTRELAIQTFETL--VKIGRLHSFSAGLIIGGNNYKEEKER 157
Query: 568 LSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGY 705
LS + +I+V TP R L H+ L ML++DEAD I G+
Sbjct: 158 LS-RMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 77.4 bits (182), Expect = 2e-15
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Frame = +1
Query: 202 VMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVI 381
+ F E+++ ++ + + + EPT IQ P LL G+DV+ A TGSGKT AF +P +
Sbjct: 167 LQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL 224
Query: 382 QKILNLKNTSKHQSI-RALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQ 558
Q L S ++S+ R L++SP++EL Q + L ++ + + G +++
Sbjct: 225 Q---YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLI--QGTNLKAV-VVYGGAPKSE 278
Query: 559 KAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYEDEI 717
+A + +++ TP R L + ++ + + LV+DEAD + G+E +I
Sbjct: 279 QARAAKNASVIIGTPGRLLDLINDGSIDCSQ-VGYLVLDEADRMLDTGFEQDI 330
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 76.2 bits (179), Expect = 4e-15
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 8/175 (4%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F + +D + A++ G+ + T +Q AIPL L+ KD+++ A TGSGKT A+ +P K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 388 ILNLKNTSKHQSIRALILSPSKELCGQITSVIGDL------TIKCARE-VRCIDISANGD 546
+ + + + ALI++P++EL QI +V +L ++ ++ V + I G
Sbjct: 63 V--TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 547 TQTQKAILSDK-PDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGYE 708
A +K P +V+ TP R ++ +++ K L +L++DEAD + G++
Sbjct: 121 LTNDLASFREKNPSVVIGTPGR--LNEMLSHISSKH-LEILILDEADTLIDMGFQ 172
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 73.7 bits (173), Expect = 2e-14
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 4/185 (2%)
Frame = +1
Query: 175 N*KMTDEKKVMFHEM-ELDDRILKAISQLGWPEPTLIQETAIPLLLEGKD-VLMRARTGS 348
N M ++ +F E+ L ++S+ G+ + T +Q+ + + ++ +++A+TG+
Sbjct: 28 NSTMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGT 87
Query: 349 GKTAAFAVPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCID 528
GKT AF + + +L K I ++ILSP++EL QI LT V
Sbjct: 88 GKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRV-SYA 146
Query: 529 ISANGDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLS--MLVVDEADLIFSXG 702
I N + + AI ++++ATP R HL+ N R+ E LS ++DEAD + G
Sbjct: 147 IGGNSKMREENAIRRGNANLLIATPGRLEDHLQ--NPRILESLSTDSFILDEADRLMDMG 204
Query: 703 YEDEI 717
+ + I
Sbjct: 205 FAESI 209
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 72.5 bits (170), Expect = 5e-14
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Frame = +1
Query: 268 EPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLKNTSKHQSIRALILSP 447
E T IQ AIP + +D+L A TGSGKT A+ P++QK L L + RA+I++P
Sbjct: 68 ECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQK-LQLHVPGGY---RAIIVAP 123
Query: 448 SKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKA-ILSDKPDIVVATPSRALVHL 624
++ELC QI L+ ++ I++S + + +KA L +K D+ + TP R LV
Sbjct: 124 TRELCEQIYRQAEKLSF--GTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMR-LVQA 180
Query: 625 KANNMRLKEDLSMLVVDEADLIFSXGYEDE 714
+ E + V+DEAD +F G+ ++
Sbjct: 181 IQTGLSF-EKVEFFVMDEADRLFEPGFIEQ 209
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 2e-12
Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEG--KDVLMRARTGSGKTAAFAVPVI 381
F E+EL +LK I + + +P+ IQE A+PLLL ++++ ++++G+GKTAAFA+ ++
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 382 QKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQK 561
++ + +A+ L+PS+EL QI V+ ++ K I D+ +
Sbjct: 176 SRV-----DASVPKPQAICLAPSRELARQIMDVVTEMG-KYTEVKTAFGIK---DSVPKG 226
Query: 562 AILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEAD 684
A + IV+ TP + +K + + D+ + V+DEAD
Sbjct: 227 AKID--AQIVIGTPGTVMDLMKRRQLDAR-DIKVFVLDEAD 264
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 67.3 bits (157), Expect = 2e-12
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPV--- 378
F L+ +L+ I G+ +PT +Q+ +IP++ G+D++ A+TGSGKTA F P+
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 379 ----------IQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCARE-VRCI 525
+ + + + LIL+P++EL QI + C R VR
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE---ESRKFCYRSWVRPC 287
Query: 526 DISANGDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSXGY 705
+ D + Q + D++ ATP R LV L ++ LV+DEAD + G+
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGR-LVDLIDRGRISLANIKFLVLDEADRMLDMGF 346
Query: 706 EDEI 717
E +I
Sbjct: 347 EPQI 350
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.9 bits (146), Expect = 4e-11
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Frame = +1
Query: 208 FHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQK 387
F + L +L+AI+ G+ P+ +Q+ IP + G DVL +A++G GKTA F + +Q+
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 388 ILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAI 567
I + + L+L ++EL QI + + K +VR + +
Sbjct: 113 IEPVDG-----EVSVLVLCHTRELAFQIKNEYARFS-KYLPDVRTAVFYGGINIKQDMEA 166
Query: 568 LSDK---PDIVVATPSRALVHLKANNMRLKEDLSMLVVDEAD 684
DK P IVVATP R ++ +++ + V+DE D
Sbjct: 167 FKDKSKSPHIVVATPGRLNALVREKILKV-NSVKHFVLDECD 207
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 56.4 bits (130), Expect = 4e-09
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Frame = +1
Query: 202 VMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLE----------GKDVLMRARTGSG 351
V F + + ++++ + + +Q +PLLL+ G DV + A TGSG
Sbjct: 126 VEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSG 185
Query: 352 KTAAFAVPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVI-----GDLTIKCA--- 507
KT ++ +P++Q L+ + + +R +++ P++EL Q+ G CA
Sbjct: 186 KTLSYVIPIVQ-CLSHRTVPR---LRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTG 241
Query: 508 -REVRCIDISANGDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEAD 684
+ +R NGD + D++V+TP R + H++ + + L +V+DEAD
Sbjct: 242 QKSLRHETYQLNGDENECRI------DVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEAD 295
Query: 685 LIFSXGYED 711
+ ++D
Sbjct: 296 RLLDQSFQD 304
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 36.7 bits (81), Expect = 0.003
Identities = 30/130 (23%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = +1
Query: 316 KDVLMRARTGSGKTAAFAVPVI---QKILNLKNTSKHQSIRALILSPSKELCGQITSVIG 486
+++L+ A TG+GKT + ++ QK L + Q+ + + ++P K L + ++
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKAL---VQEMVN 592
Query: 487 DLTIKCAR-EVRCIDISANGDTQTQKAILSDKPDIVVATPSR-ALVHLKANNMRLKEDLS 660
+ + + +R +++ GD+Q K +S+ I+V TP + ++ KAN++ +
Sbjct: 593 NFSKRLTPYNIRVAELT--GDSQLTKQQISET-QIIVTTPEKWDIITRKANDLSYVNLVR 649
Query: 661 MLVVDEADLI 690
++++DE L+
Sbjct: 650 LVIIDEVHLL 659
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 34.3 bits (75), Expect = 0.018
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Frame = +1
Query: 280 IQETAIPLLLE-GKDVLMRARTGSGKTAAFAVPVIQKI------LNLKNTSK-----HQS 423
IQ P+ + +++L+ A TG+GKT + ++Q I +NL + S+
Sbjct: 281 IQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDD 340
Query: 424 IRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAILSDKPDIVVATP 603
+ + ++P K L ++ +G + R GD Q K +++ I+V TP
Sbjct: 341 FKIVYIAPMKALAAEVVEKMGKRLAWLGLKTR----ELTGDMQLTKTEIAE-TQILVTTP 395
Query: 604 SR--ALVHLKANNMRLKEDLSMLVVDEADLI 690
+ + + +L E + ++++DE ++
Sbjct: 396 EKWDVVTRKSVGDTQLAEKVRLVIIDEVHML 426
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.5 bits (68), Expect = 0.12
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Frame = +1
Query: 283 QETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLKNTSKHQSIRALILSPSKELC 462
Q AI L G V++ T SGK+ + +P++Q +L +QS A + P+K L
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLL-----EDNQS-TAFFVFPTKSLA 369
Query: 463 -GQITSVIGDLT-IKCAREVRCIDISANGDTQTQKAILSDKPDIVVATPSRALVHLKANN 636
Q S+I L+ + + +R + +++++I+ +I+ P + N
Sbjct: 370 QDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIR-SANIIFTNPDMLHQTILPNA 428
Query: 637 MR---LKEDLSMLVVDEA 681
R ++L + V+DEA
Sbjct: 429 NRWYYFFKNLKLFVLDEA 446
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 30.3 bits (65), Expect = 0.29
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 283 QETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLKNTSKHQSIRALILSPSKELC 462
Q TAI + + VL+ A T +GKT + Q + N + I++L +EL
Sbjct: 130 QSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELL 189
Query: 463 ---GQITSVIGDLTI 498
G + + GD++I
Sbjct: 190 SEFGDVGLMTGDVSI 204
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.50
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 137 HLKVNFIKITFYFIRFYNTKY 75
H + NFIK+TFY I F+ Y
Sbjct: 111 HKRDNFIKVTFYLIMFFTLLY 131
>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 28.7 bits (61), Expect = 0.88
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 277 LIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLKNTSKHQSIRALILS 444
L+Q +++EG L+ GS A+ V ++ KI + NT++ +++ L L+
Sbjct: 178 LLQNGVNRIMVEGGAELLAKAFGSTDIDAYVVTIVPKIFSCSNTTEIKNLNNLNLT 233
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 283 QETAIPLLLEGKDVLMRARTGSGKTAAFAVPVI 381
Q AI L GKDV + TG GK+ + +P +
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,591
Number of Sequences: 5004
Number of extensions: 51538
Number of successful extensions: 181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -