Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J19
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   112   2e-25
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    29   2.5  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  112 bits (269), Expect = 2e-25
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +2

Query: 137 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 313
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 314 RRMGESDDCIVRLTKKDGILAKN 382
           RRMGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 219 SLAWMRRLLAEHFLGQYKSTNSPASFCILYVCNGKFLSNFTV 94
           S  W+ RL A   L  Y ST   A+  +  +CNG     FT+
Sbjct: 92  SATWLVRLSASLSLPVYPSTLKEANLFVTVICNGYAYPLFTL 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,178,708
Number of Sequences: 27780
Number of extensions: 192796
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)