Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_J17
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1583 + 28036125-28037030,28037411-28037656 31 0.88
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 31 0.88
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 31 0.88
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 29 3.5
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 29 3.5
12_02_0189 + 15165485-15168694 28 6.2
10_08_0757 + 20367348-20367560,20367657-20367904,20371406-203717... 28 6.2
05_03_0660 + 16724361-16724684,16725085-16725300 28 6.2
03_01_0154 - 1223879-1224274,1224391-1224585 28 6.2
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 28 8.2
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320 28 8.2
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 31.1 bits (67), Expect = 0.88
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 495 WLKF*KLACYPMRLIWEHWPITP 563
W F KLAC P+ + E WP +P
Sbjct: 169 WRDFLKLACMPLAAVVESWPTSP 191
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 31.1 bits (67), Expect = 0.88
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 309 SHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL 196
+H+ C + GNW+ + + F+ G + V K K+Q+
Sbjct: 139 AHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 495 WLKF*KLACYPMRLIWEHWPITPPN 569
W F +L CYP+ + WP PP+
Sbjct: 133 WRDFLRLHCYPLESFIDQWPSNPPS 157
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 220 NCSCTANKGHGGQWLPISHLRVIE 291
+C C +KG + +P+ HLR+++
Sbjct: 557 DCKCEQHKGWSNEMIPLDHLRMVD 580
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 342 DTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL-RHKKFTPN 172
DT++DP++ S HI+ C+ + A+VT V G ++ RKSK L R PN
Sbjct: 204 DTVFDPVALSCGHIY-CYLCSCSA-----ASVTIVDGLKSAERKSKCPLCRQAGVFPN 255
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 335 SVSSDGLRRRQGWDPD 382
+V S GLRRR WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782
>10_08_0757 +
20367348-20367560,20367657-20367904,20371406-20371730,
20372299-20372541
Length = 342
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 495 WLKF*KLACYPMRLIWEHWPITPPN 569
W + +L CYP+ WP PP+
Sbjct: 128 WRDYLRLHCYPLHQFVPDWPSNPPS 152
>05_03_0660 + 16724361-16724684,16725085-16725300
Length = 179
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -1
Query: 653 CLAANVANV*NGTRSTTPPILCERILRPVRRRYGPVLPNQSHRITRQLSKLQPFRHPTDV 474
CL+ V+ + PP + RP R Y PV+ + +T+++ T
Sbjct: 33 CLSNVVSAAAKSPAAAPPPAVVLVHARPARPLYYPVIDGGGYVLTQEVMDSMDRYMATAA 92
Query: 473 DPPVLKAADI 444
D V KA DI
Sbjct: 93 DSVVAKARDI 102
>03_01_0154 - 1223879-1224274,1224391-1224585
Length = 196
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 495 WLKF*KLACYPMRLIWEHWPITPPN 569
W + +L CYP+ WP PP+
Sbjct: 122 WRDYLRLHCYPLHRYLPDWPSNPPS 146
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 566 EQAEEFVRKVWEASWNVCHFXHLPRWLQDNDYL 664
EQA ++KVW + WN + + D+DYL
Sbjct: 1198 EQAWMAIKKVWASKWNERAYFSTRKVKLDHDYL 1230
>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
Length = 463
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 512 AGVLSDEIDLGALAHNAAEQAEEFVRKVWE---ASWNVCHF-XHLPRWL 646
AG L DE +LGA E+ + R +W+ WN H L W+
Sbjct: 37 AGELGDEGELGARRARRGEEVQRRFRLLWKFRCVKWNFSHMEVQLMDWM 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,988
Number of Sequences: 37544
Number of extensions: 404089
Number of successful extensions: 1022
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -