Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J09
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   112   3e-26
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   111   6e-26
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.8  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   5.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    24   9.4  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.4  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  112 bits (269), Expect = 3e-26
 Identities = 49/83 (59%), Positives = 56/83 (67%)
 Frame = +1

Query: 49  TKGXSSFGKRRNKXHTLCRXCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 228
           TKG  SFG R NK HT+CR CG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 229 XXMRHLKIVRRRFRNGFKEGKPT 297
             M +LK V R F+NGF+ GKPT
Sbjct: 62  GRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  111 bits (266), Expect = 6e-26
 Identities = 50/90 (55%), Positives = 57/90 (63%)
 Frame = +1

Query: 49  TKGXSSFGKRRNKXHTLCRXCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 228
           TKG  SFG R NK HT+CR CG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 229 XXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 318
             M +LK V R F+NGF+ GKP     A A
Sbjct: 62  GRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 254 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 141
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 82  NKXHTLCRXCGRSSYHIQKSKCAQCGYP 165
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 101 HNVWXLFRRLPKLEXPFVXLSXLTIRKSIGRP 6
           H VW  FR    +   +  L+ L I  S GRP
Sbjct: 655 HCVWLKFRNFDLVFMAYKRLNALLIELSSGRP 686


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 354 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 259
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,848
Number of Sequences: 5004
Number of extensions: 22814
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)