Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_J07
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 30 0.27
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.4
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 26 4.4
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 4.4
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 4.4
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 25 7.8
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 7.8
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 203 YLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAP 304
Y G + +G+++L VRN + +G++++ +H GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326
>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
RNA-mediated gene silencing |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 143 LEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRI 277
L H+N DPA +GAGA Y+G + + +LS T+ QGT++
Sbjct: 220 LIHVNEDPACGSGAGA-VGVYIGSSQKTPTSLSF---TISQGTKL 260
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = -1
Query: 294 TGCTDTILVPWSTVPLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILS 115
T CT + VP+++ P+ + +TI S TP P + +S+ S L+
Sbjct: 494 TNCTTSTSVPYTSTPVTSSNYTISSS-TP-VTSTPVTTTNCTTSTSVLYTSTPVTSTPLA 551
Query: 114 RLTCGTKYGGPPISTSLAS 58
C T P ST + S
Sbjct: 552 TTNCTTSTSVPYTSTPVTS 570
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 300 APTGCTDTILVPWSTVPLRTLRFTIPSQFTP 208
A T CT + VP+++ P+ + +TI S TP
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSS-TP 580
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 413 VVAKNRTGKSNFITSIRETLKTHY 484
+V +N +GKSNF +IR L Y
Sbjct: 30 IVGRNGSGKSNFFAAIRFVLSDAY 53
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 198 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 85
HGP + A + L S + LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = -1
Query: 291 GCTDTILVPWSTVPLRTLRFTIPSQFTPRY------GHGPAPAPAR 172
G +D +VPW +F +P+ + PR+ G+ AP P +
Sbjct: 142 GMSDGSVVPWDVTRHCLGKFKVPNLYVPRHEEWRMMGYSYAPVPGK 187
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 412 FNYLSGFPFRQQVVSEQRSPGLVVGQLLLEVAAA 311
FNY +P + ++ + R PG++ L E A+A
Sbjct: 474 FNYFREYPGSKDIMLDGRGPGMLEKMYLSEKASA 507
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 20 EPPYYLK--SPGLTGDAKLVEIGGPPYLVPQV 109
EP YLK S +TG + +++G +L P++
Sbjct: 261 EPDRYLKYASESITGHSTTIDVGFERFLAPEI 292
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 95 LVPQVKRDKIYDLAKLLEHLNR 160
LVP K K Y L L +HLNR
Sbjct: 260 LVPNEKNPKEYILKLLFDHLNR 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,887
Number of Sequences: 5004
Number of extensions: 51053
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -