Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J07
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...   142   3e-34
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    30   1.8  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    30   1.8  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    30   1.8  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    30   1.8  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    30   1.8  
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    27   9.5  
AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen prot...    27   9.5  

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score =  142 bits (343), Expect = 3e-34
 Identities = 74/209 (35%), Positives = 117/209 (55%), Gaps = 1/209 (0%)
 Frame = +2

Query: 8   PMLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAG 187
           P L++PP+  KS G   + ++ E+GGP  L P    D  +D+ K+ +      A + G G
Sbjct: 21  PDLSKPPFNQKSSGFGHNLRIAEVGGPGNLYPGFHIDHQFDIPKIGKVCEHPEAAVFGPG 80

Query: 188 AGPWPYLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALL 367
           AGPWP +G NCE + +++++ G V  GTRI  ++          Y+Q+ +  DE + +L+
Sbjct: 81  AGPWPIVGQNCEMVADVNLKTGEV--GTRIAEINS----NSDKRYVQRII--DEPKFSLM 132

Query: 368 GNYLLTEG-KPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYF 544
            N  L++  K   V+   A  R G+ N    IR+ L+ H+G K+V L G F+++ G+   
Sbjct: 133 ANLALSDADKSSTVVHFKASVRKGEKNLTNCIRDGLQEHFGKKIVSLAGQFIIQTGKARL 192

Query: 545 HVMPDFSRAPLCSDAAVDSXLHYFELDAP 631
           HVMPDF   P  ++A VD  L+YFE+ AP
Sbjct: 193 HVMPDFPGCPFENNAEVDKWLNYFEMSAP 221


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -2

Query: 404 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 225
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 213 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 267

Query: 224 PRSSRPGTATV 192
           P SSRP   +V
Sbjct: 268 PSSSRPSICSV 278


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -2

Query: 404 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 225
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 288 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 342

Query: 224 PRSSRPGTATV 192
           P SSRP   +V
Sbjct: 343 PSSSRPSICSV 353


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -2

Query: 404 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 225
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 222 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 276

Query: 224 PRSSRPGTATV 192
           P SSRP   +V
Sbjct: 277 PSSSRPSICSV 287


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -2

Query: 404 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 225
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 366 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 420

Query: 224 PRSSRPGTATV 192
           P SSRP   +V
Sbjct: 421 PSSSRPSICSV 431


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -2

Query: 404 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 225
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 213 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 267

Query: 224 PRSSRPGTATV 192
           P SSRP   +V
Sbjct: 268 PSSSRPSICSV 278


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 278 VSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSN 445
           VS  PV AP  S    QQQ P    +TA +GN+L  +   G ++ V   + T + +
Sbjct: 308 VSKAPVVAPS-SQLQQQQQQPCSSNQTARIGNFLERDQVRGNLLGVPLSSSTPRGS 362


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
            Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 290  PVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRET 469
            PVG P    G L +Q    E +  LLG +      P   +  V  +   K + I   +E 
Sbjct: 1514 PVGPPAIKKGKLSRQPGRREGQKPLLGPFQRRSADP--QVDNVGSHEVRKDSKILDQQER 1571

Query: 470  LKTHYG 487
            L+ H+G
Sbjct: 1572 LQDHHG 1577


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
            protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 290  PVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRET 469
            PVG P    G L +Q    E +  LLG +      P   +  V  +   K + I   +E 
Sbjct: 1514 PVGPPAIKKGKLSRQPGRREGQKPLLGPFQRRSADP--QVDNVGSHEVRKDSKILDQQER 1571

Query: 470  LKTHYG 487
            L+ H+G
Sbjct: 1572 LQDHHG 1577


>AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen protein
           115 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   GRPMLTEPPYYLKSPGLTGDAKLVEIGGPP 91
           G P    PP    SPG  G++K  EI GPP
Sbjct: 279 GPPGPPGPPGLHGSPGSYGESKEEEIAGPP 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,677
Number of Sequences: 27780
Number of extensions: 329463
Number of successful extensions: 1037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)