Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J05
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    28   4.9  
Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical...    27   6.5  

>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 21  VTLRRTKQTIKMFKYLIFVALLAFASAKPLLVSYTSPXSCCIY 149
           +TL RT         L+F+ ++A ASA      Y  P  CCI+
Sbjct: 111 ITLNRTNVFTFCRTLLLFIPIIAVASAAATFSQYIFP--CCIF 151


>Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical
           protein Y57G11B.5 protein.
          Length = 225

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 54  MFKYLIFVALLAFASAKPL 110
           MFK L+F ALLA+A A P+
Sbjct: 1   MFKSLVFSALLAYAVAAPM 19


>AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical
           protein Y105E8B.9 protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 5   RPMTISHSPTN*TNNQNVQILDLRC 79
           RP+T  + PTN  N+Q   ++D  C
Sbjct: 464 RPVTTVYGPTNFDNDQTADLMDFIC 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,829,042
Number of Sequences: 27780
Number of extensions: 122510
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)