Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_J03
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 30 0.41
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 29 0.72
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.3
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 1.3
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 28 1.3
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 3.8
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 5.0
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.0
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 5.0
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 8.8
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 8.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.8
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 25 8.8
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 29.9 bits (64), Expect = 0.41
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGC 732
+ + W T IA +D VR++ S F + + L+W P LA GC
Sbjct: 107 IVAIDWSFDGTYIATGGMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHP-KGLFLAAGC 165
Query: 733 EQG-VXVWT 756
G + +W+
Sbjct: 166 NDGSIWMWS 174
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.72
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +1
Query: 502 PKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCS---EVTFVSTLKCKAQ 672
PK +R Q P++ L W+ +++A ++ +V V+ S + F + L +
Sbjct: 10 PKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGNRGY 69
Query: 673 GHVSSLNWRPLSASEL-AVGCEQGVXVW 753
G V L W P + L AV + + W
Sbjct: 70 GLVEQLVWDPTHSDRLMAVYAGKMIRFW 97
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 151 CKLNEVYCCGNARYGNISTFSNATKKHPIINVTRDLHHHRTSDENI 288
C EVYC YG ++ K I+ + ++ + H +D +
Sbjct: 480 CNALEVYCPAQREYGRLNVVGTLMSKRKIMKLVKEGYVHGWNDPRL 525
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGC 732
V +A P+ IAV ++D +RV+ T V L+ + V S+ + P S+ L+
Sbjct: 446 VTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKES-VYSIAFSPDSSILLSGSL 504
Query: 733 EQGVXVW 753
++ + VW
Sbjct: 505 DKTIKVW 511
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 28.3 bits (60), Expect = 1.3
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Frame = +1
Query: 256 LHHH-RTSDENISMYIDVEDNLLKK----ITSVWYKQGFLEALSVA-ADPSVNRESPTLA 417
LHH T + ++Y V N L K +T ++ Q +V S+N T+
Sbjct: 79 LHHEDETIEIQDNLYTSVFHNGLMKTEDHLTLLYTPQAVFRVRAVTRCTASMNGHDGTI- 137
Query: 418 VTASYILKVANILTAFRYFLQPHLKDIGPKI-VANYSRTRNWGQVPVKCLAWHPHTTKIA 594
++A + ++ L L D + +A NW V C+AW P + IA
Sbjct: 138 ISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNW----VSCVAWAPDASIIA 193
Query: 595 VATVDDNVRVY 627
++D+ +R +
Sbjct: 194 TGSMDNTIRFW 204
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVY---CSEVTFVSTLKCKAQGHVSSLNW 696
+ C+AW P + V N+ VY S + V T+K Q V L W
Sbjct: 247 ISCMAWSPINWTLLVGGSTGNIYVYRRTKSMMRRVHTIKKVHQEQVCGLEW 297
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 562 LAWHPHTTKIAVATVDDNVRVYCSEV-TFVSTLKCKAQGHVSSLNWRPLSASELAV 726
+A HP A ++ D +VR+Y S V + + + WRP+ LAV
Sbjct: 296 VAAHPMLPLFATSSQDKSVRIYNSNTYNLVHVIDGFHTRSIRRVAWRPIERPVLAV 351
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVY 627
V C A+HP I A++D VRV+
Sbjct: 140 VMCAAFHPSEDLIVSASLDQTVRVW 164
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVY 627
V C +HPH I A+ D +RV+
Sbjct: 259 VSCCLFHPHQELILSASEDKTIRVW 283
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGH 678
+ C+ W ++ V T D+N VYC ++ + T GH
Sbjct: 192 ITCMNWSKSNHRM-VYTADNNNLVYCYDIANLKTPLSVLSGH 232
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 544 QVPVKCLAWHPHTTKIAVATVDDNVRVY-CSEVTFVSTLKCKAQGHVSSLNWRPLSASEL 720
Q + CLA + T++ +D +V++Y S+ V + K G + S+ P S + L
Sbjct: 250 QKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVHGM--KYSGPILSMGLSPDSCN-L 306
Query: 721 AVGCEQG 741
VG G
Sbjct: 307 VVGMSNG 313
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 565 AWHPHTTKIAVATVDDNVRVYCSE--VTFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQ 738
AWHP AVA+ D V V + + L + V+ ++W A +
Sbjct: 193 AWHPKNGTFAVASTDHFVSVISPDDWLPLYKLLPKENHSGVTDISWSSNGMYIAASFKKG 252
Query: 739 GVXVW 753
G+ +W
Sbjct: 253 GILIW 257
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.8
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVY 627
+ +AW P+ ++A ++ DD V+++
Sbjct: 352 IVAMAWSPNGYQLATSSADDTVKIW 376
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 413 NVGLSLLTEGSAATLRASKNPCLYQTLVIFLSKLSSTSMYMEIFSSDV 270
NVGLS+ GSAA ++A K + + +FL++ + + + F SD+
Sbjct: 394 NVGLSVSRVGSAAQVKAMKQ--VAGQIKLFLAQYREVASFAQ-FGSDL 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,858
Number of Sequences: 5004
Number of extensions: 59912
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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