Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_J03
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 39 0.005
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 39 0.005
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 32 0.57
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 31 0.99
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 29 3.0
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 29 4.0
09_04_0271 + 16271569-16271767,16272072-16272206,16272286-162725... 29 5.3
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 29 5.3
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 29 5.3
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 28 7.0
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 28 9.2
03_03_0256 + 15898702-15900420 28 9.2
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 28 9.2
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 544 QVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVST---LKCKAQGHVSSLNWRPLSAS 714
++ + ++W+PH +A + + V V+ E L Q V ++ WRP S
Sbjct: 99 EIDTQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGK 158
Query: 715 ELAVGCEQGVXVWT 756
+AVGC+ G+ +W+
Sbjct: 159 VIAVGCKGGICLWS 172
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 544 QVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVST---LKCKAQGHVSSLNWRPLSAS 714
++ + ++W+PH +A + + V V+ E L Q V ++ WRP S
Sbjct: 123 EIDTQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGK 182
Query: 715 ELAVGCEQGVXVWT 756
+AVGC+ G+ +W+
Sbjct: 183 MIAVGCKGGICLWS 196
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 562 LAWHPHTTKIAVATVDDNVRVYCSEV-TFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQ 738
L W P +AV + +NV +Y + V TLK + + V SL W P + G ++
Sbjct: 212 LCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVTAGLDK 271
Query: 739 GVXVW 753
V +W
Sbjct: 272 QVLIW 276
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 31.1 bits (67), Expect = 0.99
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 520 YSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVT 642
+ R + V C+ HPHT IA + +D++V+++ T
Sbjct: 361 FLRAMEGDECVVNCIEPHPHTMTIASSGIDNDVKIWTPSAT 401
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 475 LQPHLKDIGPKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATV-DDNVRVYCSEVTFVS 651
L KDI +V + +W + ++C ++H + T A+ V ++ +R + ++ +
Sbjct: 207 LHQSAKDISKAVVGHDDDEEHWHRAALRC-SFHVNKTTTAILLVTEELIRQWAAQGFLAT 265
Query: 652 TLKCK 666
T +CK
Sbjct: 266 TSRCK 270
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +1
Query: 490 KDIGPKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVS----TL 657
+D P++ ++ T + C + + +A ++VD VR++ + + S T+
Sbjct: 254 EDDFPEVKVDFQETFLGHNSSISCCRFSASGSNVASSSVDGTVRIWTYDSSTPSSKNATI 313
Query: 658 KCKAQGHVSSLNWRPLSASELAVG-CEQGVXVW 753
C ++ VS+L+W S L +G G+ W
Sbjct: 314 YCGSE--VSALSWECRSDRLLLIGTANGGIKAW 344
>09_04_0271 +
16271569-16271767,16272072-16272206,16272286-16272548,
16272865-16272996,16273083-16273199,16273752-16273904,
16274417-16274529,16274600-16274753,16274900-16275118
Length = 494
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 205 TFSNATKKHPIINVTRDLHHHRTSDENISMYID--VEDNLLKKITSVWYKQG 354
TFS+ T+KH + ++ H N S+YID + + KK++ ++G
Sbjct: 157 TFSDTTEKHRLQTSRKEHDHDEFLFTNDSIYIDPGISGEMRKKVSDAATREG 208
>02_04_0485 +
23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 547 VPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLK 660
V +KC+A HP + +A A +D Y T +S LK
Sbjct: 799 VCMKCMAMHPEASAVAPALLDMIRSRYAKPKTSISVLK 836
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 547 VPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLK 660
V +KC+A HP + +A A +D Y T +S LK
Sbjct: 782 VCMKCMAMHPEASAVAPALLDMIRSRYAKPKTSISVLK 819
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 550 PVKCLAWHPHTTKIAVATV-DDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSA 711
P+K L H T K T+ + +++ Y +++ V L A+G SLN+R + +
Sbjct: 97 PLKFLRPHYGTLKAYFETMPESDLKKYMADILSVLALTMSAEGERESLNYRMIGS 151
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 550 PVKCLAWHPHTTKIAVATVDDNVRVY 627
P+ CL +HPH +A + D V+ +
Sbjct: 192 PINCLDFHPHEFLLATGSADKTVKFW 217
>03_03_0256 + 15898702-15900420
Length = 572
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/63 (20%), Positives = 31/63 (49%)
Frame = +1
Query: 493 DIGPKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQ 672
+ G +V Y + +P ++ HP++ +A ++D+ + +Y ++ F K +
Sbjct: 440 EFGIPVVIKYISEPHMHSMP--SISLHPNSNWLAAQSLDNQILIYSTKERFQLNKKKRFA 497
Query: 673 GHV 681
GH+
Sbjct: 498 GHI 500
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 553 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWR 699
V +AWHP+ +A + D RV TF+ + + +S +W+
Sbjct: 107 VTSVAWHPNNILLATTSTDGKCRVLS---TFIKGVDTRGSHASTSTDWK 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,912
Number of Sequences: 37544
Number of extensions: 344820
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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