Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J03
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    32   0.51 
AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    28   8.2  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    28   8.2  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        28   8.2  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    28   8.2  

>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 553 VKCLAWHPHTTKIAVATVDDNVRVYCSEV--TFVSTLKCKAQGHVSSLNWRPL 705
           V C+AW P  TKIA A  +  + ++ ++       TLK   Q  ++SL W+P+
Sbjct: 150 VLCIAWSPDATKIASACKNGEICIWNAKTGEQIGKTLKRHKQ-WITSLAWQPM 201


>AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical
           protein Y79H2A.6 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +1

Query: 535 NWGQVPVKCLAWHPHTTKIAVATVDDNVRVY---CSEVTFVSTLKCKAQGHVSSLNWRPL 705
           N+G  P+ C AW+   T+IAV+   +++ ++     +   + TL  +    V+ L+W   
Sbjct: 11  NFGIGPITCHAWNKDRTQIAVSASSNDIHIFEWRNGDWQSIHTLS-EHDLPVTGLDWGTK 69

Query: 706 SASELAVGCEQGVXVWT 756
           +   ++   ++   VWT
Sbjct: 70  TNRIVSCSQDKNAFVWT 86


>Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical
           protein K01G5.4 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +1

Query: 298 IDVEDNLLKKITSVWYKQGFLEALSVAADPSVNRESPTLAVTASYILKVANILTAFRYFL 477
           +DV+D  +K  T  ++++  L+   ++A  + N E P L + A  +L   N+       L
Sbjct: 123 VDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWL-ARKLLGDPNLEFVAMPAL 181

Query: 478 QPHLKDIGPKIVANYSR 528
            P    + P ++A Y +
Sbjct: 182 APPEVQMDPAMIAEYEK 198


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 357 KSLFVPNTSNF-FEQIIFYIYVHGN 286
           K LF+P TS    EQ++FYI   GN
Sbjct: 56  KCLFIPATSRSQLEQVLFYIQKRGN 80


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 357 KSLFVPNTSNF-FEQIIFYIYVHGN 286
           K LF+P TS    EQ++FYI   GN
Sbjct: 56  KCLFIPATSRSQLEQVLFYIQKRGN 80


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 357 KSLFVPNTSNF-FEQIIFYIYVHGN 286
           K LF+P TS    EQ++FYI   GN
Sbjct: 56  KCLFIPATSRSQLEQVLFYIQKRGN 80


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 357 KSLFVPNTSNF-FEQIIFYIYVHGN 286
           K LF+P TS    EQ++FYI   GN
Sbjct: 56  KCLFIPATSRSQLEQVLFYIQKRGN 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,630,227
Number of Sequences: 27780
Number of extensions: 344044
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)