Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J03
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.0  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   5.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 577 HTTKIAVATVDDNVRVYCSEVTFVSTLK 660
           H T + + ++D+N   Y +++ F  T K
Sbjct: 66  HVTVMGLDSIDENSMTYAADIFFAQTWK 93


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 238 INVTRDLHHHRTSDENISMYIDVEDNLLKKITSV 339
           +++ +DL+ +       +MY  + D + K+IT++
Sbjct: 62  VDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 95


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 529 TRNWGQVPVKCLAWHPHTTKIAVATVDDNVRV 624
           TR WG+         PH   +     DDN++V
Sbjct: 500 TRGWGEYTPVVYKKTPHAMGLDYVGEDDNMQV 531


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 90  YKFMDLNFKITGRTLKIIV--LHC 25
           + F D+NF+I G  +K ++   HC
Sbjct: 391 FNFDDVNFRILGANVKELIRNTHC 414


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = +1

Query: 79  HKFISKMSIFHSFPNLPGPEETAFCKLNEVYCCGNARYGNIST 207
           H++  ++  ++     PGP++  + + +  +C  N + G + T
Sbjct: 56  HRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGT 98


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = +1

Query: 79  HKFISKMSIFHSFPNLPGPEETAFCKLNEVYCCGNARYGNIST 207
           H++  ++  ++     PGP++  + + +  +C  N + G + T
Sbjct: 57  HRYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGT 99


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 211 SNATKKHPIINVTRDLHHHRTS 276
           S   K+HPI+ +   + H +T+
Sbjct: 139 SQLIKRHPIVTIMGHVDHGKTT 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,465
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)