Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J02
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    29   2.1  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    29   3.7  
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           28   4.8  
08_02_0648 - 19694538-19696569,19697151-19697998                       27   8.5  

>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 325 IPVELMEISKAMA--PMTKEEWEKKQSIIRRVLDE 423
           IP+ ++ IS  ++  P+ KEEWEK +  I  VLD+
Sbjct: 372 IPLAIISISGLLSNRPIIKEEWEKVKESIGFVLDK 406


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 286 SQSRDKSPEVSADIPVELMEISKAMAPMTKEE 381
           S S+++S   SAD+PV L+E+      + KEE
Sbjct: 368 SNSQNESVPTSADVPVGLVEVGSNSNDLRKEE 399


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 325 IPVELMEISKAMA--PMTKEEWEKKQSIIRRVLDE 423
           +P+ ++ IS  +A  P+ KEEWEK +  I   LD+
Sbjct: 377 LPLAIISISGLLANRPVIKEEWEKVKESIGFALDK 411


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 325 IPVELMEISKAMA--PMTKEEWEKKQSIIRRVLDEE 426
           +P+ ++ I+  +A  P TK+EWE+ ++ I  VL+ +
Sbjct: 378 LPLAIVNIASLLATKPATKQEWERVKNSIFCVLERD 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,506,416
Number of Sequences: 37544
Number of extensions: 106294
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)