Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_J02
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +1

Query: 289 QSRDKSPEVSADIPVELMEISKAMAPMTKEE-------WEKKQSIIRRVLDEETGRYR 441
           +S  K P ++A+ P ELM +++  A + K+E       W++ ++  R++ ++E  + R
Sbjct: 182 KSSSKEPAMNANNPSELMRVAEDRARIEKKEEEMEHKDWDELEARRRKIFEDEKEKNR 239


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 428 VSSSNTLLIMLCFFSHSSFVIGAMAFEIS 342
           + +S   +I+LC F  S F I  M F+IS
Sbjct: 626 IRNSKKTVIILCHFRFSKFYIYKMVFDIS 654


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 428 VSSSNTLLIMLCFFSHSSFVIGAMAFEIS 342
           + +S   +I+LC F  S F I  M F+IS
Sbjct: 626 IRNSKKTVIILCHFRFSKFYIYKMVFDIS 654


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,538,566
Number of Sequences: 27780
Number of extensions: 100076
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)