Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I23
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711           44   4e-05
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    27   4.9  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    27   4.9  
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316...    27   6.5  
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290...    27   8.6  
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883...    27   8.6  

>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
          Length = 81

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 101 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQY 253
           M +  +W+EF   +  L+   P  TRY VKY H +G   +K+TDN + + +
Sbjct: 1   MVYFDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHENIHW 51


>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 200 NVNI*HCTEYLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLK 60
           +VN  +   +  DP+    PR  +T P   Q+ +RP   Y+ ++FL+
Sbjct: 147 SVNANYLLNFHYDPISRPQPRGPRTYPTRRQRKIRP---YNKDLFLQ 190


>02_03_0199 + 16263549-16263644,16264941-16265899,16267140-16267791,
            16267895-16267981,16268253-16268381,16269990-16270036,
            16271337-16271438,16272720-16272843,16272981-16273028,
            16273934-16274026,16274325-16274408,16274536-16274619,
            16274751-16274819,16275531-16275590,16275946-16276017,
            16276957-16277064,16278162-16278238,16278391-16278474,
            16278617-16278728,16278778-16278810,16278811-16278900,
            16279012-16279077,16279163-16279258,16279446-16279497,
            16279723-16279775,16279998-16280018
          Length = 1165

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 164  DPVDITF-PRLSQTLPNLEQKSLRPIIDYSLEMFLKIVP 51
            D +  TF PRL   LP+ ++K++  I+   L++FLK  P
Sbjct: 1009 DEIQSTFTPRLLGVLPDSDEKNVYDILLLVLQVFLKQGP 1047


>10_08_0825 +
           20831170-20831349,20831380-20831547,20831627-20831698,
           20831997-20832075,20832182-20832375,20832469-20832558,
           20832851-20832940,20833196-20833282,20833477-20833560,
           20833690-20833809,20834096-20834103,20834443-20834575,
           20835044-20835125,20835330-20835496,20836006-20836493,
           20836551-20836638,20836716-20836818,20836932-20837083,
           20837191-20837316,20837459-20837529,20837691-20837753,
           20838418-20838490,20838972-20839040,20839180-20839257,
           20839434-20839484,20839586-20839696
          Length = 1008

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
 Frame = +2

Query: 221 KITDNK----KCLQYKTEVQQDVRKIDKFMSNLLRHMASNDN*I--NVIINL 358
           +ITDNK    K +Q   E++QD++  +    N  RH++S+ N +  ++++N+
Sbjct: 201 QITDNKFWPVKGMQLVMELEQDLKVANVICMNGRRHVSSSKNEVSRDLVVNV 252


>12_02_1084 -
           25928373-25928426,25928551-25928652,25928913-25929039,
           25929292-25930730,25931430-25931447
          Length = 579

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 98  VMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN 217
           + T   NW+E  K +++  L+D ++T YSV  +   G F+
Sbjct: 42  ISTLNKNWKE--KISKIAALRDELSTIYSVVSASESGVFS 79


>04_04_1596 +
           34684943-34686340,34688085-34688175,34688290-34688354,
           34688530-34688581,34688747-34688829,34688942-34689035,
           34689468-34690051
          Length = 788

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +2

Query: 125 EFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRK 283
           +F    +  ++   ++ + ++  SH KG+ ++  T  KK LQYK++++  +RK
Sbjct: 501 QFNPVDDNFFISGSLDEKVALVGSH-KGSCHLFDTTEKK-LQYKSQIELRIRK 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,115,915
Number of Sequences: 37544
Number of extensions: 143820
Number of successful extensions: 287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)