Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_I23
(431 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20998-1|AAA70170.1| 86|Homo sapiens signal recognition partic... 84 2e-16
BC066957-1|AAH66957.1| 86|Homo sapiens signal recognition part... 84 2e-16
BC022415-1|AAH22415.1| 86|Homo sapiens signal recognition part... 84 2e-16
BC015094-1|AAH15094.1| 86|Homo sapiens signal recognition part... 84 2e-16
BC008443-1|AAH08443.1| 86|Homo sapiens signal recognition part... 84 2e-16
EF488978-1|ABP02070.1| 82|Homo sapiens signal recognition part... 54 3e-07
BC067845-1|AAH67845.1| 82|Homo sapiens SRP9 protein protein. 54 3e-07
BC021995-1|AAH21995.1| 82|Homo sapiens SRP9 protein protein. 54 3e-07
BC106005-1|AAI06006.1| 52|Homo sapiens SRP9 protein protein. 52 8e-07
BC064351-1|AAH64351.1| 49|Homo sapiens SRP9 protein protein. 52 8e-07
BC017414-1|AAH17414.1| 45|Homo sapiens Similar to signal recog... 42 7e-04
X57398-1|CAA40655.1| 1190|Homo sapiens pm5 protein protein. 29 6.8
U91318-4|AAC15783.1| 1148|Homo sapiens pM5 (3' partial) protein. 29 6.8
BC065535-1|AAH65535.1| 1222|Homo sapiens NODAL modulator 1 protein. 29 6.8
BC041131-1|AAH41131.1| 1222|Homo sapiens NODAL modulator 2 protein. 29 6.8
BC028389-1|AAH28389.1| 1100|Homo sapiens NOMO2 protein protein. 29 6.8
BC064142-1|AAH64142.1| 414|Homo sapiens chromosome 1 open readi... 29 9.0
BC039109-1|AAH39109.1| 418|Homo sapiens C1orf177 protein protein. 29 9.0
AK097520-1|BAC05087.1| 414|Homo sapiens protein ( Homo sapiens ... 29 9.0
>U20998-1|AAA70170.1| 86|Homo sapiens signal recognition particle
subunit 9 protein.
Length = 86
Score = 84.2 bits (199), Expect = 2e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 298
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ CL YKT+ QDV+KI+KF
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66
Query: 299 SNLLRHMASND 331
S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77
>BC066957-1|AAH66957.1| 86|Homo sapiens signal recognition
particle 9kDa protein.
Length = 86
Score = 84.2 bits (199), Expect = 2e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 298
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ CL YKT+ QDV+KI+KF
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66
Query: 299 SNLLRHMASND 331
S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77
>BC022415-1|AAH22415.1| 86|Homo sapiens signal recognition
particle 9kDa protein.
Length = 86
Score = 84.2 bits (199), Expect = 2e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 298
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ CL YKT+ QDV+KI+KF
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66
Query: 299 SNLLRHMASND 331
S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77
>BC015094-1|AAH15094.1| 86|Homo sapiens signal recognition
particle 9kDa protein.
Length = 86
Score = 84.2 bits (199), Expect = 2e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 298
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ CL YKT+ QDV+KI+KF
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66
Query: 299 SNLLRHMASND 331
S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77
>BC008443-1|AAH08443.1| 86|Homo sapiens signal recognition
particle 9kDa protein.
Length = 86
Score = 84.2 bits (199), Expect = 2e-16
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 298
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ CL YKT+ QDV+KI+KF
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66
Query: 299 SNLLRHMASND 331
S L+R M + +
Sbjct: 67 SQLMRLMVAKE 77
>EF488978-1|ABP02070.1| 82|Homo sapiens signal recognition
particle 9 kDa isoform protein.
Length = 82
Score = 53.6 bits (123), Expect = 3e-07
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 268
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ ++CL +Q
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58
>BC067845-1|AAH67845.1| 82|Homo sapiens SRP9 protein protein.
Length = 82
Score = 53.6 bits (123), Expect = 3e-07
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 268
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ ++CL +Q
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58
>BC021995-1|AAH21995.1| 82|Homo sapiens SRP9 protein protein.
Length = 82
Score = 53.6 bits (123), Expect = 3e-07
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 268
WEEF +AAE LYL DP+ R +KY HS G VK+TD+ ++CL +Q
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58
>BC106005-1|AAI06006.1| 52|Homo sapiens SRP9 protein protein.
Length = 52
Score = 52.0 bits (119), Expect = 8e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 235
WEEF +AAE LYL DP+ R +KY HS G VK+TD+
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45
>BC064351-1|AAH64351.1| 49|Homo sapiens SRP9 protein protein.
Length = 49
Score = 52.0 bits (119), Expect = 8e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 119 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 235
WEEF +AAE LYL DP+ R +KY HS G VK+TD+
Sbjct: 7 WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45
>BC017414-1|AAH17414.1| 45|Homo sapiens Similar to signal
recognition particle 9kD protein.
Length = 45
Score = 42.3 bits (95), Expect = 7e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 224 ITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMASND 331
+TD+ CL YKT+ QDV+KI+KF S L+R M + +
Sbjct: 1 VTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKE 36
>X57398-1|CAA40655.1| 1190|Homo sapiens pm5 protein protein.
Length = 1190
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 156 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 260
+R++ I IH QK HL + +TIK A NT Q
Sbjct: 333 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 367
>U91318-4|AAC15783.1| 1148|Homo sapiens pM5 (3' partial) protein.
Length = 1148
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 156 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 260
+R++ I IH QK HL + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399
>BC065535-1|AAH65535.1| 1222|Homo sapiens NODAL modulator 1 protein.
Length = 1222
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 156 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 260
+R++ I IH QK HL + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399
>BC041131-1|AAH41131.1| 1222|Homo sapiens NODAL modulator 2 protein.
Length = 1222
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 156 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 260
+R++ I IH QK HL + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399
>BC028389-1|AAH28389.1| 1100|Homo sapiens NOMO2 protein protein.
Length = 1100
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 156 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 260
+R++ I IH QK HL + +TIK A NT Q
Sbjct: 198 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 232
>BC064142-1|AAH64142.1| 414|Homo sapiens chromosome 1 open reading
frame 177 protein.
Length = 414
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSH-SKGAFNVKIT 229
F V S + PNW++F + + P +TRYS + SH G ++ K T
Sbjct: 29 FGVQSHRFDISAVYPNWKKFS-----TFTEAPYSTRYSTQVSHIGPGTYSSKET 77
>BC039109-1|AAH39109.1| 418|Homo sapiens C1orf177 protein protein.
Length = 418
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSH-SKGAFNVKIT 229
F V S + PNW++F + + P +TRYS + SH G ++ K T
Sbjct: 29 FGVQSHRFDISAVYPNWKKFS-----TFTEAPYSTRYSTQVSHIGPGTYSSKET 77
>AK097520-1|BAC05087.1| 414|Homo sapiens protein ( Homo sapiens
cDNA FLJ40201 fis, clone TESTI2020265. ).
Length = 414
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSH-SKGAFNVKIT 229
F V S + PNW++F + + P +TRYS + SH G ++ K T
Sbjct: 29 FGVQSHRFDISAVYPNWKKFS-----TFTEAPYSTRYSTQVSHIGPGTYSSKET 77
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,259,830
Number of Sequences: 237096
Number of extensions: 875787
Number of successful extensions: 1452
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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