Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_I16
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 27 2.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 3.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 4.3
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 5.7
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 5.7
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 7.5
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.5
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 7.5
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 26 7.5
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 26 7.5
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 289 TELQEIHNALHQYLREIIKE-HQENLQLGAPKDVIDAF 399
TE QE+HN ++R++I+ H + L++ K V F
Sbjct: 193 TEDQEVHNFFQNWIRDLIQTYHFDGLRIDTAKHVQKEF 230
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 295 LQEIHNALHQYLREIIKEHQENLQLGAPKDVIDAF 399
++ IH++ H++LREI+ ++ E+++ P +I F
Sbjct: 378 IKTIHHSEHKFLREILYDYYEHVK-NNPNTLISQF 411
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 250 PFLRHFVPRLIGFTELQEIHNALHQYLREIIKEHQENLQ 366
P L + L +TELQE Q L +++ E + LQ
Sbjct: 2382 PVLSEIIAALYRYTELQEAERKSQQELADLVTESLQVLQ 2420
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 108 VEHLIDQDRLSSIGQTQLYEGFTFFAYVNVHE 13
++HL D RL +I T Y YVN+H+
Sbjct: 408 IDHLYDSLRLLAISVTMKYVRNQTILYVNLHD 439
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 260 LRNGRKLRIPPLISTSLNKRITRLHSFLSRWSSKSYLF-PATNLQSMLTIVM 108
L+ G K +I+ ++TR+ + + ++ S Y+F P +Q +L V+
Sbjct: 824 LKTGNKDNFQNMINFDKRTKVTRILNEIKKFQSVGYMFNPINEVQELLNEVI 875
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 681 HRCDSRYPQSFKNYRFCVHHSYSVVKQMITIATDYVIY 568
H C + Y ++ + +HH+ S +T DYVI+
Sbjct: 368 HSCPTLYHDDAEDIYYDLHHTESYSNINLTKTPDYVIH 405
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 151 RYDLEDQRLKKLCSLVMRLFKLVDMSGGI-LNFLPFLRHFVPRLIGFTELQEIHNALHQY 327
R E+ + KKL +L+ + +D+S GI LNF L+ L T + + Q+
Sbjct: 122 RNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQF 181
Query: 328 LR 333
LR
Sbjct: 182 LR 183
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 190 SLVMRLFKLVDMSGGILNFLPFLRHFV 270
S VMR FK +D S +FL +LR ++
Sbjct: 267 SQVMRRFKEIDPSFNTEHFLQYLREYI 293
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 53 YSCVWPMLESRSWSIRCSTLQ*STYFGDWL 142
YSC+W LES S++ R + + YF D L
Sbjct: 42 YSCIWEELESGSFNTRVNIM----YFVDTL 67
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 RLVAGKRYDLEDQRLKKLCSL-VMRLFKLVDMSGGILNFLPF 255
R GK + D++L L ++++ K VD GILN +PF
Sbjct: 627 RARGGKPIIITDKKLDNLEGFTIIKVPKTVDCLQGILNVIPF 668
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,857
Number of Sequences: 5004
Number of extensions: 74560
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -