Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I11
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   152   5e-38
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    94   2e-20
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    79   5e-16
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   5.0  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.8  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  152 bits (369), Expect = 5e-38
 Identities = 68/107 (63%), Positives = 81/107 (75%)
 Frame = +1

Query: 82  MGVTVETXSPGAXSTYPKSGQXVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 261
           MGV  +  S G    +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 262 DEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 402
           DEGV KMS+GE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 50/106 (47%), Positives = 66/106 (62%)
 Frame = +1

Query: 85  GVTVETXSPGAXSTYPKSGQXVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 264
           GV V     G+ ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 265 EGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 402
            GVA M  G   K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 42/88 (47%), Positives = 52/88 (59%)
 Frame = +1

Query: 133 KSGQXVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 312
           K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD G+  M VG    +  
Sbjct: 274 KRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHI 332

Query: 313 SPDYAYGQQGHPGVIPPNSTLIFDVELL 396
               AYG +  PG IP NS L+FDV+LL
Sbjct: 333 PAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 668 TFLKSILSL*FHHNTYLHLRDNCIYIY 748
           TFLK I     H   Y + +DNCIY+Y
Sbjct: 255 TFLKGISRRSGHQMVY-NPKDNCIYLY 280


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 523 YTNIVYL*WKYIYIYAIRKNFIL*VNKFMVRLINEIL 633
           +  I+Y  W  +  + I   + L V KF+V+L+++I+
Sbjct: 3   FATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKIV 39


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 320 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 189
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,555
Number of Sequences: 5004
Number of extensions: 58029
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)