Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I10
         (522 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CBA27 Cluster: hypothetical protein TTHERM_0055...    32   6.9  
UniRef50_Q5CYG3 Cluster: Giant membrane protein; n=2; Cryptospor...    32   6.9  
UniRef50_Q6B8Z4 Cluster: Hypothetical plastid protein; n=1; Grac...    32   9.2  

>UniRef50_UPI00006CBA27 Cluster: hypothetical protein TTHERM_00558470;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00558470 - Tetrahymena thermophila SB210
          Length = 2053

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 107  IVXCVFISVNLSQHDKLSIIVVINNKQIRQFQMNSAHVVVLSFNKHSTVTQVLTTQCEIH 286
            I  C+++S    QH K+S I  + +  I+Q   N    +  S+N++S  T +L  Q  I+
Sbjct: 916  ITSCLYLSNVERQHQKISYITFLTHDLIQQLNPNMHQEIYKSWNEYSYFT-LLINQIFIY 974

Query: 287  I 289
            +
Sbjct: 975  L 975


>UniRef50_Q5CYG3 Cluster: Giant membrane protein; n=2;
           Cryptosporidium|Rep: Giant membrane protein -
           Cryptosporidium parvum Iowa II
          Length = 1789

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +2

Query: 122 FISVNLSQHD-KLSIIVVINNKQIRQFQMNSAHVVVLSFNKHSTVTQVLTTQCEIHIYFY 298
           F  +NLS +  K  I ++IN+ + +      +  ++L + +  ++T+ ++  C+ H+  +
Sbjct: 639 FSIINLSSNILKKKIELIINDIESKVKDSEKSSNLILQYKRFYSLTEWISKYCKYHL--F 696

Query: 299 QMCPN*IPIFMYNSHLYY 352
           Q  P+ IPIF+   HL +
Sbjct: 697 QKHPSCIPIFL-ELHLVF 713


>UniRef50_Q6B8Z4 Cluster: Hypothetical plastid protein; n=1;
           Gracilaria tenuistipitata var. liui|Rep: Hypothetical
           plastid protein - Gracilaria tenuistipitata var. liui
           (Red alga)
          Length = 149

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 31/102 (30%), Positives = 48/102 (47%)
 Frame = +2

Query: 101 FLIVXCVFISVNLSQHDKLSIIVVINNKQIRQFQMNSAHVVVLSFNKHSTVTQVLTTQCE 280
           FLI  C++       + KL I   +NN  I  FQ N   ++V S    S   ++++    
Sbjct: 4   FLIFSCMYF------YQKLDIN--LNNYYIFVFQYNFIFILVAS----SLSYEIISND-- 49

Query: 281 IHIYFYQMCPN*IPIFMYNSHLYYSH*YTMFYKILFYFNLLH 406
            ++YFYQ+C        YNS L+ S     F KILF+  + +
Sbjct: 50  -YLYFYQICN-------YNSSLFSSIMRKRFLKILFFIMMFY 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,275,041
Number of Sequences: 1657284
Number of extensions: 6966938
Number of successful extensions: 12078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12055
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)