Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I10
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autopha...    29   2.0  
AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autopha...    29   2.0  
Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform b protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 101 FLIVXCVFISVNLSQHDKLSIIVVINNKQIRQFQMNSAHVVVLSFNKHSTVTQVLTTQCE 280
           ++ +  ++   NLS++D +  I+V  ++   QFQM    ++   F ++      L T+ E
Sbjct: 80  YIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQMVDRDMMEAMFMQNIKEADYLKTKAE 139

Query: 281 I 283
           I
Sbjct: 140 I 140


>AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform a protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 101 FLIVXCVFISVNLSQHDKLSIIVVINNKQIRQFQMNSAHVVVLSFNKHSTVTQVLTTQCE 280
           ++ +  ++   NLS++D +  I+V  ++   QFQM    ++   F ++      L T+ E
Sbjct: 80  YIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQMVDRDMMEAMFMQNIKEADYLKTKAE 139

Query: 281 I 283
           I
Sbjct: 140 I 140


>Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical
           protein C06C3.6 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 342 ICIILIDTQCFIKYCFILIYCI 407
           ICI+++ T  FI+Y F + +CI
Sbjct: 219 ICIVIVLTVVFIQYTFFISHCI 240


>U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical protein
            K07E3.7a protein.
          Length = 1174

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 307  THLIKINMYFTLCCQHLGYCTMFIETEDH 221
            T +I   ++FT CC +LGY   F+ ++ H
Sbjct: 1016 TTMIGTTVFFTSCCMYLGYA--FVYSKGH 1042


>U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical protein
            K07E3.7b protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 307  THLIKINMYFTLCCQHLGYCTMFIETEDH 221
            T +I   ++FT CC +LGY   F+ ++ H
Sbjct: 1045 TTMIGTTVFFTSCCMYLGYA--FVYSKGH 1071


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,286,932
Number of Sequences: 27780
Number of extensions: 186403
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)