Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_I09
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.89
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 29 0.89
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 28 1.6
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 27 2.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.6
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.7
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 4.7
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 4.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.3
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 6.3
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 6.3
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 8.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.3
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 278 KSMSRDQFSGCHPGRSFSPNHSRRGPSSLQCRLLETITR*TTMEALHSV 424
+S SRD FS RS+S + SR L+ L+E +TR T E + +
Sbjct: 73 RSSSRDSFSS---NRSYSSSLSRSPEEPLRTILVENLTRNVTKEHIAEI 118
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 28.7 bits (61), Expect = 0.89
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +2
Query: 479 YAESTATLIPTATNGSS---PTSLVTLATLTSQ---TKRMNPKLQHLTPPSATTEYRTTP 640
YA+S+ +P+ + S PT+L + T TS ++R++ + S+ T T
Sbjct: 153 YAQSSRYTLPSLPSSPSYNCPTTLRKIHTNTSSNGTSRRVSGLGSFMAQNSSETSSNRTS 212
Query: 641 REWPPGQQPHDPPRRSSRTISEMPT 715
+ PG + +RSS T++ MP+
Sbjct: 213 A-YLPGSSTDEQEKRSSVTLASMPS 236
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 533 TSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTPREWPP 655
TSLV LT +T ++ LQ+L P A R W P
Sbjct: 240 TSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKRVWGP 280
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 425 TRLRMGPSRRRPEVPTVSYAESTATLIPTATN---GSSPTSLVTLATLTSQTKRMNPKLQ 595
T +R+ R E +S A +TAT + T+ G+SP +L+T T ++NP
Sbjct: 434 TEIRLAEQRMNEERRRLS-AAATATPMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNPSES 492
Query: 596 HLTPPSATTEYRTTPREWPPGQQPHD 673
+ + +P+ P Q D
Sbjct: 493 VVVASEKASSPDLSPKLLPSESQIFD 518
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 419 SVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQH 598
S T L S V + + + +T++++PT++ S+P S T TS + +
Sbjct: 387 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNS 446
Query: 599 LTPPSATT 622
T SA++
Sbjct: 447 TTATSASS 454
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 419 SVTRLRMGPSRRRPEVPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQH 598
S T L S V + + + +T++++PT++ S+P S T TS + +
Sbjct: 501 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNS 560
Query: 599 LTPPSATT 622
T SA++
Sbjct: 561 TTATSASS 568
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 488 STATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATT 622
+T++L+P++T S+P S T TS + + T SA++
Sbjct: 277 NTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASS 321
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 467 PTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNP-KLQHLTPPSATT 622
P SY++ + +P++T+ SPTS + T + ++P + PS+T+
Sbjct: 102 PVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTS 154
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 203 LEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHP-GRSFSPNHSRRGP 355
L R S + +PY D + + R + P GRS SP++ RR P
Sbjct: 113 LRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSP 164
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 473 VSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNP 586
VSY+ +L + +G SP SLV+ T S NP
Sbjct: 79 VSYSNPIPSLTWLSLDGDSPDSLVSTPTAPSANHHGNP 116
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = -1
Query: 660 WPGG--HSRGVVRYSVVALGGVKCWSFGFILFVWLVRVARVTRDVGELPFVAVGINVAVL 487
WPGG H + Y+ L + G+ +WL +VG + V IN
Sbjct: 201 WPGGTGHYKLGGNYAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMNCFTVWINKNGE 260
Query: 486 SAYDTVGTSGLLLEGPIRSLVTE 418
T G++L G R + E
Sbjct: 261 KEIITAPLDGMILPGVTRDSILE 283
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 675 GSWGCWPGGHSRGVVRYSVVALGG 604
G W W +R ++RY V LGG
Sbjct: 426 GFWRAWHRSFNRWLIRYIYVPLGG 449
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 476 SYAESTATLIPTATNGSSPTSLVTLATLTSQTKRM 580
S S+ T PT T+ +PT T T T+Q+ M
Sbjct: 844 SSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGM 878
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 464 VPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTPR 643
+PT S + +T+T IPT + S T + TS + P PP++T+ T
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP-----IPPTSTSSTDTNSS 276
Query: 644 EWP 652
P
Sbjct: 277 PLP 279
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 485 PRTTQSVPLVSSLKDPSAAS*PNVKLPSSF 396
P+ +VP +S+ S AS PN+K S F
Sbjct: 70 PKIPSAVPHISTPNPSSGASTPNIKRVSDF 99
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -1
Query: 501 NVAVLSAYDTVGTSGL---LLEGPIRSLVTE 418
++ +++AYDT+G GL L E +R + TE
Sbjct: 145 SMTIVTAYDTLGEEGLLHSLRESGVRGMYTE 175
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 376 IRNYNKVNDDGSFTFGYEAADGSFKEETRGTDCVVRGKYGYID 504
I+NY+K+N FG E AD E+ +C G+ G ++
Sbjct: 124 IKNYSKINILIKELFGLEVADCIEDEDGYRFNCKNTGRRGTLE 166
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = +2
Query: 464 VPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQH----LTPPSATTEYR 631
VP+ +YA++ + P ++NG +LVT + S + H T +
Sbjct: 53 VPSENYADTPSRNTPNSSNGFPSETLVTSSAHCSTQPHKDEAYSHHGYSSTMALDDSSLA 112
Query: 632 TTPREWPPGQQPHDPPRRS 688
T E+ G + P RR+
Sbjct: 113 QTYHEYEEGTSGNSPLRRA 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,616
Number of Sequences: 5004
Number of extensions: 55029
Number of successful extensions: 159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -