Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_I08
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 300 5e-82
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 300 5e-82
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 268 1e-72
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 210 8e-60
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 183 9e-47
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 183 9e-47
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 163 8e-41
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 103 1e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 87 8e-18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 87 8e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 78 5e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 78 5e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 78 5e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 8e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 37 0.009
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 33 0.11
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.11
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.19
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.19
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.77
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 1.0
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.0
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.8
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.8
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 3.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 5.4
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 300 bits (736), Expect = 5e-82
Identities = 144/170 (84%), Positives = 148/170 (87%)
Frame = +2
Query: 59 MGKAXPXXXXXXXXXXXSGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVL 238
MGK SGKSTTTGHLIYKCGGIDKRTIE FEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 239 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPXFEEI 568
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE F EI
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 300 bits (736), Expect = 5e-82
Identities = 144/170 (84%), Positives = 148/170 (87%)
Frame = +2
Query: 59 MGKAXPXXXXXXXXXXXSGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVL 238
MGK SGKSTTTGHLIYKCGGIDKRTIE FEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 239 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPXFEEI 568
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE F EI
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 268 bits (658), Expect = 1e-72
Identities = 128/149 (85%), Positives = 132/149 (88%)
Frame = +2
Query: 59 MGKAXPXXXXXXXXXXXSGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVL 238
MGK SGKSTTTGHLIYKCGGIDKRTIE FEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 239 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLI 505
GEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 210 bits (513), Expect(2) = 8e-60
Identities = 99/117 (84%), Positives = 102/117 (87%)
Frame = +2
Query: 59 MGKAXPXXXXXXXXXXXSGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVL 238
MGK SGKSTTTGHLIYKCGGIDKRTIE FEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 239 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 409
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 37.9 bits (84), Expect(2) = 8e-60
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 500 LIVGVNKMDSTEPPYSEPXFEEI 568
L+V NKMDSTEPP+SE F EI
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEI 136
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 183 bits (445), Expect = 9e-47
Identities = 87/153 (56%), Positives = 111/153 (72%)
Frame = +2
Query: 110 SGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 289
+GKST GHL++ +D RTI+ F+ EA GK SF YAWVLD+ + ERERG+T+DI
Sbjct: 181 AGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGR 240
Query: 290 WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 469
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHA
Sbjct: 241 TSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHA 300
Query: 470 LLAFTLGVKQLIVGVNKMDSTEPPYSEPXFEEI 568
LL +LGV QLIV VNK+D+ + +S+ F+EI
Sbjct: 301 LLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEI 331
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 183 bits (445), Expect = 9e-47
Identities = 87/153 (56%), Positives = 111/153 (72%)
Frame = +2
Query: 110 SGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 289
+GKST GHL++ +D RTI+ F+ EA GK SF YAWVLD+ + ERERG+T+DI
Sbjct: 199 AGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGR 258
Query: 290 WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 469
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHA
Sbjct: 259 TSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHA 318
Query: 470 LLAFTLGVKQLIVGVNKMDSTEPPYSEPXFEEI 568
LL +LGV QLIV VNK+D+ + +S+ F+EI
Sbjct: 319 LLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEI 349
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 163 bits (396), Expect = 8e-41
Identities = 74/153 (48%), Positives = 105/153 (68%)
Frame = +2
Query: 110 SGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 289
+GKST G L++ G +DKRT+E +E+EA+E G+ S+ +W +D ERE+G T+++
Sbjct: 120 AGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREKGKTVEVGR 179
Query: 290 WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 469
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH+
Sbjct: 180 AYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHS 239
Query: 470 LLAFTLGVKQLIVGVNKMDSTEPPYSEPXFEEI 568
+L T GVK L++ VNKMD + E F+EI
Sbjct: 240 MLVKTAGVKHLVILVNKMDDPTVKWEEERFKEI 272
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 103 bits (246), Expect = 1e-22
Identities = 49/67 (73%), Positives = 50/67 (74%)
Frame = +2
Query: 59 MGKAXPXXXXXXXXXXXSGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVL 238
MGK SGKSTTTGHLIYKCGGIDKRTIE FEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 239 DKLKAER 259
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 87.0 bits (206), Expect = 8e-18
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 415
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 416 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 535
G E QT+EH +LA +GVK + + +NK D E
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 87.0 bits (206), Expect = 8e-18
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 415
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 416 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 535
G E QT+EH +LA +GVK + + +NK D E
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 77.8 bits (183), Expect = 5e-15
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 415
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 416 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMD 526
G QTREH LLA +GV ++V +NK+D
Sbjct: 147 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 77.8 bits (183), Expect = 5e-15
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 415
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 416 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMD 526
G QTREH LLA +GV ++V +NK+D
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 77.8 bits (183), Expect = 5e-15
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 415
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 416 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMD 526
G QTREH LLA +GV ++V +NK+D
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 53.2 bits (122), Expect = 1e-07
Identities = 35/98 (35%), Positives = 49/98 (50%)
Frame = +2
Query: 233 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 412
+LDKL+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 413 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 526
G QT + LAF + Q+I +NK+D
Sbjct: 136 NQG-------VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 46.0 bits (104), Expect = 2e-05
Identities = 43/139 (30%), Positives = 59/139 (42%)
Frame = +2
Query: 110 SGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 289
SGK+T T ++Y G ID E+ +G +D + ER+RGITI A
Sbjct: 55 SGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQRGITIQSAA 104
Query: 290 WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 469
+ + IID PGH DF + D AVL++ G G G+ T
Sbjct: 105 TYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQ 159
Query: 470 LLAFTLGVKQLIVGVNKMD 526
L + + I VNKMD
Sbjct: 160 LARYNV---PFICFVNKMD 175
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 44.0 bits (99), Expect = 8e-05
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +2
Query: 206 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 382
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 383 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 526
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/104 (30%), Positives = 46/104 (44%)
Frame = +2
Query: 110 SGKSTTTGHLIYKCGGIDKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 289
+GK+T T L+Y G I A + KG+ V D L ERERGIT+ A
Sbjct: 36 AGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERERGITVQSAA 82
Query: 290 WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
+ + + +ID PGH DF + D V+++ G
Sbjct: 83 VNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +2
Query: 317 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 496
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 497 QLIVGVNKMDSTE 535
++I+ +NK D E
Sbjct: 127 RVIIVLNKCDLAE 139
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 314 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 493
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 494 KQLIVGVNKMDSTEPPYSEPXFEEI 568
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 236 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 519 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 391
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 239 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 403
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
Query: 404 VAAGTG 421
V A G
Sbjct: 232 VDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 239 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 403
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
Query: 404 VAAGTG 421
V A G
Sbjct: 107 VDAHEG 112
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.7 bits (66), Expect = 0.77
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Frame = +2
Query: 113 GKSTTTGHLIYKCGGI-----DKRTIEXFEKEAQE----MGKGSFKYAWVLDKLKAERER 265
GKST T L+ K G I + K+ QE + + + L+K E +
Sbjct: 31 GKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVK 90
Query: 266 GI----TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
G T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 91 GENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 30.3 bits (65), Expect = 1.0
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Frame = +2
Query: 113 GKSTTTGHLIYKCGGI-----DKRTIEXFEKEAQE----MGKGSFKYAWVLDKLKAERER 265
GKST T L+ K G I + K+ QE + + + L+K E +
Sbjct: 31 GKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVK 90
Query: 266 GI----TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
G T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 91 GENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +2
Query: 323 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 502
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 503 IVGVNKMDSTEPPYSEP 553
++ +NK+D S P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 161 DKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERE 262
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 161 DKRTIEXFEKEAQEMGKGSFKYAWVLDKLKAERE 262
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -3
Query: 502 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 344
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 343 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 224
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 317 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 412
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,725
Number of Sequences: 27780
Number of extensions: 228916
Number of successful extensions: 592
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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