Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I04
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...   105   6e-24
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...   102   4e-23
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   1.9  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   7.7  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score =  105 bits (251), Expect = 6e-24
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
 Frame = +1

Query: 100 SRKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLXSHTLALFD 279
           S K  +  R  +     K Y      E  L    + + V LP G D NEW+  +T+  + 
Sbjct: 5   SNKTAKTFRVRKTEAGTKHYQLRQYAEATLGSGSLMEAVKLPKGEDLNEWIAMNTMDFYT 64

Query: 280 HVNLVYGTVSEFCTAATCPDMTGPGGRSYAWYDER--GKKSRVAAPQYVDYVMTYTQKTV 453
            +N++YGT++EFCTAA+CP M       Y W D++   K +R++AP Y++ ++ +TQ+ +
Sbjct: 65  QINMLYGTITEFCTAASCPQMNAGPSYEYYWQDDKIYTKPTRMSAPDYINNLLDWTQEKL 124

Query: 454 NDETVFPTKYANEFPAQFEGXXXXXXXXXXXXXAHMY 564
           +D+ +FPT+   EFP  F               AH+Y
Sbjct: 125 DDKKLFPTEIGVEFPKNFRKVIQQIFRRLFRIYAHIY 161


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score =  102 bits (244), Expect = 4e-23
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
 Frame = +1

Query: 124 REGEPAGDPK-LYLQEALLERKLPELDMRQLVDLPHGLDYNEWLXSHTLALFDHVNLVYG 300
           R G P+ +P  LYLQ+  +   L + +   +V LP  +D +EW+  +   LF ++N  Y 
Sbjct: 43  RTGSPSVEPTALYLQQPFVRTHLVKGNFSTIVSLPRFVDLDEWVALNVYELFTYLNHFYD 102

Query: 301 TVSEFCTAATCPDMTGPGGRSYAWYDERGKKSRVAAPQYVDYVMTYTQKTVNDETVFPTK 480
             + FCT  TCP M+      Y W D   K   + APQY++YV+ + +  ++D+ VFPTK
Sbjct: 103 VFATFCTVKTCPVMSAAANFDYTWLDNNRKPVHLPAPQYIEYVLAWIENRLHDQNVFPTK 162

Query: 481 YANEFPAQFEGXXXXXXXXXXXXXAHMY 564
               FP+ F               AHMY
Sbjct: 163 AGLPFPSNFLVIVKAIYKQMFRIFAHMY 190


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 73  PSYLYSAVPSRKARRKEREGEPAGDPK 153
           P YLY + PS+  ++   E EP   P+
Sbjct: 82  PKYLYPSSPSKSTKKPHNETEPLLSPQ 108


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 362  LRPPGPVMSGHVAAVQ---NSDTVPYTRFTWSNSASVC 258
            L+ PG  MSG V+ +    + D +P T+FT +N   VC
Sbjct: 1070 LQLPGH-MSGRVSRIDMFDDYDILPETKFTRNNLVGVC 1106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,834
Number of Sequences: 5004
Number of extensions: 21458
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)