Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_I04
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 104 6e-23
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 103 7e-23
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 102 2e-22
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 29 1.9
03_06_0434 + 33894664-33895173 29 2.6
10_08_0520 - 18495118-18498237 28 4.5
01_01_1127 + 8930593-8932681,8932812-8933401 28 4.5
01_06_1268 - 35878520-35879353,35879920-35880332,35881109-358815... 27 7.8
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 104 bits (249), Expect = 6e-23
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Frame = +1
Query: 118 KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLXSHTLALFDHVNLVY 297
+ ++ P+G L++ + + L ++R+ V LP G D NEWL +T+ F+ VNL+Y
Sbjct: 41 RPKKSAPSGSKGAQLRKHI-DATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLY 99
Query: 298 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 471
GT++EFCT +CP MT Y W D + K V+AP+YV+Y+M + + ++DE++F
Sbjct: 100 GTLAEFCTPESCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIF 159
Query: 472 PTKYANEFPAQFEGXXXXXXXXXXXXXAHMY 564
P K FP F+ AH+Y
Sbjct: 160 PQKLGTPFPPNFKEVVKTIFKRLFRVYAHIY 190
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 103 bits (248), Expect = 7e-23
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Frame = +1
Query: 118 KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLXSHTLALFDHVNLVY 297
+ ++ P+G L L++ + + L ++R+ V LP G D NEWL +T+ F+ VN +Y
Sbjct: 15 RPKKSSPSGSKGLPLKKHI-DATLGSGNLREAVRLPIGEDLNEWLAVNTVDFFNQVNFLY 73
Query: 298 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 471
GT+ EFCT++TCP M+ Y W D + K +V+AP+YV+Y+M + + ++DE +F
Sbjct: 74 GTLMEFCTSSTCPIMSAGPKYEYRWADGMKVKKPVQVSAPKYVEYLMDWVESQLDDEAIF 133
Query: 472 PTKYANEFPAQFEGXXXXXXXXXXXXXAHMY 564
P K FP F +HMY
Sbjct: 134 PQKIGAPFPQNFREVIRTIFKRLFRVYSHMY 164
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 102 bits (245), Expect = 2e-22
Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Frame = +1
Query: 118 KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLXSHTLALFDHVNLVY 297
+ ++ P+G+ + L++ + + L ++R V LP G D NEWL +T+ F+ VN++Y
Sbjct: 832 RPKKNAPSGNKGVQLKKHI-DATLGSGNLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILY 890
Query: 298 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 471
GT+ EFCT TCP M+ Y W D + K V+AP+YV+Y+M + + ++DE++F
Sbjct: 891 GTLMEFCTPTTCPTMSAGPKFEYRWADGIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIF 950
Query: 472 PTKYANEFPAQFEGXXXXXXXXXXXXXAHMY 564
P K FP F AH+Y
Sbjct: 951 PQKLGTPFPQNFREVVKTIFKRLFRVYAHIY 981
>03_03_0105 + 14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 127 EGEPAGDPKLYLQEALLER--KLPELDMRQLVDLPHG 231
E P GDP YL LL R K +D +L+D+P G
Sbjct: 971 ENVPEGDPAQYLVAELLCRAAKKNGMDFHELLDIPQG 1007
>03_06_0434 + 33894664-33895173
Length = 169
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 105 PGRDRRVQVGGQ*EQHTEHDGVTHRGDERRLIGR 4
PGR R G Q E DG RG+ RR +GR
Sbjct: 49 PGRMRAGVRAGWCRQEAERDGRVGRGEARRRVGR 82
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 RKARRKER-EGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYN 243
R+AR K+ E A +PK+ Q A L+RKL +L ++ +P DY+
Sbjct: 230 REARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYS 277
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 RKARRKER-EGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYN 243
R+AR K+ E A +PK+ Q A L+RKL +L ++ +P DY+
Sbjct: 133 REARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYS 180
>01_06_1268 -
35878520-35879353,35879920-35880332,35881109-35881510,
35881598-35881619
Length = 556
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 22 LVAAMCHAVVLGVLFSLPSYLYSAVPSRKARRKEREGEPAGDPKLYLQEALLERKLPEL 198
LV+ + + GVL ++ Y+ + RK R+KE+ +G Y L E +L ++
Sbjct: 495 LVSLIGGITMAGVLGTMTYYVVKSKRMRKIRKKEKMSRRSGSSSWYDNTELSETELNQV 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,500
Number of Sequences: 37544
Number of extensions: 165434
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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