Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I03
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   3.2  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    27   3.2  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.6  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    26   5.6  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.6  
SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces pombe...    26   5.6  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    25   7.5  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   7.5  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    25   9.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   9.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.9  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 132  LVRMGAACTVLLLLIYALHKWSSENIENTDVVLLADSETSYYKSHKDVYPV 284
            L ++ A C  LL      HK+       T   ++A      Y  HK++Y V
Sbjct: 1369 LRKLRATCLHLLFASLVAHKFDQPQHAQTRTKIIAIFFKDLYSPHKEIYSV 1419


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 198 SENIE-NTDVVLLADSETSYYKSHKDVYPVLKTELG 302
           ++NI  N D + +A++  SY+KSH   YP +K + G
Sbjct: 25  NKNIHSNPDFLAIAENWKSYWKSH---YPFVKNDKG 57


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 605 LRRSSVNNAVDGSHENGEALIMEDDDYRCLGQIFGVVPVF 486
           L    +NN VDG+H  G    + D+    L  +  V+P F
Sbjct: 354 LESDLLNNTVDGTHLEGSFTFL-DNGLTILDTVLAVLPTF 392


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 270 LCEICNKKFPNPQVALRQYFLCF 202
           +C+IC +K  NP V    +  C+
Sbjct: 256 ICKICGEKIKNPAVLSTGFVFCY 278


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
 Frame = +3

Query: 156 TVLLLLIYALHKWSSENIENTDVVLLADSET---SYYKSHKDVYPVL--KTELGNFEPRD 320
           T+LL     +H+ S E      + ++A   +   ++Y SH + Y ++    E     P  
Sbjct: 17  TLLLKFTDFVHQHSVEQCNQLSMYIIASVNSLAEAFYGSHPEKYNIVFQSVEYAAHSPAI 76

Query: 321 XXXXXXXXXXXXX---YHMSQKHANDVAETESKYGMNIAASNDIAMNRSIPDTRLDECKY 491
                           Y  S K  ND+  ++   G  +      A    + +  LD  K 
Sbjct: 77  SVMHVCYLKELLRQGQYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAKV 136

Query: 492 WHYPEDLAKTSVIIVFHNEGF 554
           W++      T+ +  FH E +
Sbjct: 137 WYFSILYIPTTTLTSFHEEAY 157


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 477 RAAYPVSICSLQYHLMQLYSFRIYSQSLLHHWHAS 373
           + A P+SI  + +H++  Y F +Y Q ++   HA+
Sbjct: 139 QTALPISIAII-WHVISTYGFALYRQRIVVGKHAA 172


>SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 222 VVLLADSETSYYKSHKDVYPVLKTELG 302
           +VLLA S   +YKS K V P++ T LG
Sbjct: 64  LVLLASSGPRFYKSRKPV-PMILTVLG 89


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 406 LSVSATSLACFCDMWYGLPSSPGPLIIFLSLGSKLP 299
           + V+A  +   CD ++G     GPL I +S   K P
Sbjct: 111 IPVNAADIPPECDFYFGSEIRNGPLQIMVSTNGKGP 146


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 194 PFVQSIYEK*KYSARCSHTN*PTPSKVCYSHFNSLFN 84
           P+ QS+YE  K   + + T+     K C  + NS+ N
Sbjct: 155 PYAQSLYETAKQLLQNADTDLSKLEKTCVQYMNSVQN 191


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 261 ICNKKFPNPQVALRQYFLCFHWTICAKHI 175
           IC K +P   +A++   +CFH     KHI
Sbjct: 149 ICEKCWPFITIAVQVLDICFHEDFGFKHI 177


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 274 FTQCLKQNWATLNLETRRLSKGQVK 348
           FTQ L +  +TL LE  +LSK  VK
Sbjct: 496 FTQLLHELNSTLQLEISKLSKSVVK 520


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 114 NLRRGRLVRMGAACTVLLLLIYALHKWSSENIENTDV-VLLADSETSYYKSHKDV-YPVL 287
           +L + R++     C+++L+L YA+  W +     + +       + S+ K+ ++V  PV 
Sbjct: 587 SLYKNRVLPFTYCCSIMLVLAYAIGLWFTLRTHASHIWQNFTADDISFLKAEEEVGEPVN 646

Query: 288 KTELGN 305
           +   GN
Sbjct: 647 QDTAGN 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,196
Number of Sequences: 5004
Number of extensions: 52978
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)