Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I01
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   4.0  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   5.2  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    26   5.2  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   6.9  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.2  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   9.2  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   9.2  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +3

Query: 33  LFTD*TTFIEHISINFNYNVIGFWF*SVLIMAEFDWNNYLETSKSVAVPEELFSHVETSL 212
           +F D T+ +   SIN  +  +  W   + +  +++  +  ETS +V +   L+  V   L
Sbjct: 410 VFEDRTSSVLEASINNIHTELQKWIADIPMELQWNTRSQKETSSTVLLLHMLYHSVIIIL 469

Query: 213 YNGIKQNML-LEVCHRNNPDVYWIAEITMVCGHVLRIKFIGAESD 344
                 N L L+   R   ++ W +  T+V   +L+I F   ++D
Sbjct: 470 NRPSDDNYLKLDNTERYTFEICWKSAKTIV--QLLKIYFKKYDAD 512


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 606 TVCENVGGRLLVRYDGCDEDLQQLWIFFSNPRLXSFGYVTNKGSPWQFKYPGKVN 770
           T+   + GRL  + D   +     W   SN  + + G+  N+ S W  KYP   N
Sbjct: 319 TIHNTLTGRLQNKLDTGSQVCNMAWSKTSNEIVTTHGFAKNQVSLW--KYPSLKN 371


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 702 AVG*RKISRAAVGPRRSRRTAPAACPRRSRT 610
           A+  RK++ + +GPR+ R   P+  PRR+++
Sbjct: 62  AMAVRKLNNSELGPRKIRVEFPSNDPRRNQS 92


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 26/110 (23%), Positives = 45/110 (40%)
 Frame = +3

Query: 57  IEHISINFNYNVIGFWF*SVLIMAEFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNM 236
           + H+  N +Y + G W    + + EF +N Y   S  +A+ +     +E S        M
Sbjct: 261 VVHVVFN-DYVLSGGW---TVSLQEFVFNEYCVKSSRLALHDN--KDIEYSQQPASAIFM 314

Query: 237 LLEVCHRNNPDVYWIAEITMVCGHVLRIKFIGAESDFWCDISNTKVHPLG 386
                  ++PD   I +      + LRIKF+G      C +  +K+   G
Sbjct: 315 YGSYILTSHPDNSLILQRLYSTNNELRIKFLGRLLGHVCGVQISKLFSCG 364


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 198 VETSLYNGIKQNMLLEVCHRNNPD 269
           ++  +YNG+K+N+L   C   + D
Sbjct: 431 IQERIYNGLKENLLFFGCRNKSMD 454


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 555 MKVEVQNLIDPYRYWIATV-CENVGGRLLVRY 647
           M++E Q +  PY  WI+T+ C +   R   +Y
Sbjct: 328 MEIERQPMPYPYNTWISTIRCNDCNSRCDTKY 359


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 441 YGDKIIDIMKNALMDGQSVSIEALNNKGLSPIDRIKVGMKVEVQ 572
           Y  K +D +KN  ++ +S + +  N+KGL   + +  G+   ++
Sbjct: 95  YPSKDLDYLKNEYVNYESTTSQQTNSKGLKESNFVGSGIITSIR 138


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 470 FHYINNLISIFLIYCIRGLNQFIIF 396
           F Y   L S F++ C++  NQF+++
Sbjct: 176 FSYFMLLTSHFILNCVKQENQFLVY 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,104
Number of Sequences: 5004
Number of extensions: 73521
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)