Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_I01
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0609 + 4517467-4517529,4517627-4517701,4517914-4518030,451...    32   0.58 
02_03_0411 - 18739279-18739902,18741471-18741671                       31   0.77 
02_05_0600 - 30273080-30274692,30274709-30274949                       30   1.8  
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406...    29   5.4  
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    29   5.4  
06_03_1061 + 27282979-27286854                                         28   7.2  

>07_01_0609 +
           4517467-4517529,4517627-4517701,4517914-4518030,
           4518533-4518647,4519328-4519433,4519684-4519801,
           4519905-4519972,4520697-4520830,4520932-4520975,
           4521100-4521176,4521415-4521562,4522155-4522216,
           4522373-4522472
          Length = 408

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 390 CGKYDELIEPPDAINEKYGDKIIDIMKNALMDGQSVSIEALNNKGLSPIDRIK 548
           C     LI+ P    + Y DKI+      L D + VS   L   G  P+D +K
Sbjct: 287 CNDTGALIQDPQKRFQVYNDKIVKFSTRELSDVKRVSSHHLRLLGFKPLDYLK 339


>02_03_0411 - 18739279-18739902,18741471-18741671
          Length = 274

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 610 CARTSGAGCWCGTTAATRTYSSSGYFSLTH-G*XASATSRIRAHRGSSNTPG 762
           C+R  G G   G  AA  T +SSGY S++  G   +A +  R+H  S +  G
Sbjct: 108 CSRARGRGGGGGAAAAASTTTSSGYTSVSSVGAVTAAAAAWRSHDSSGHGYG 159


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 598 G*PLCARTSGAGCWCGTTAATRTYSS--SGYFSLTHG*XASATSRIRAHRGSSNT 756
           G PLC R     CW  T++ T   S   +G  + T G  A+   R+R HR +++T
Sbjct: 141 GWPLCRR-----CWASTSSPTGLPSPQPTGVSAYTAGLYAAVVGRLRLHRPAAST 190


>11_01_0519 +
           4066776-4066892,4067042-4067099,4067322-4067608,
           4067706-4067822,4067898-4067958,4068042-4068133,
           4068547-4068632,4068926-4068975,4069077-4069117,
           4069222-4069392,4069875-4069942,4070088-4070148,
           4070471-4070757,4072008-4072172,4072759-4072760,
           4072829-4073139,4073600-4073787,4075231-4075482,
           4076035-4076114,4076199-4076399,4076959-4077014,
           4077137-4077328
          Length = 980

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 405 HHIYHTILKDELLYWIYHTRNHS 337
           HH  H   K+++L W+YH   HS
Sbjct: 229 HHTSHPWSKNKILIWMYHKLPHS 251


>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 533 NRQDQSWHEG*SAESHRSIQILDSHCVRERRGQAAGAVRRLR 658
           N +D  W+        + IQ+LDS C+   R   A  ++RL+
Sbjct: 617 NMKDNHWYLAVVNIEKKQIQVLDSMCMTFNRADLANTLQRLQ 658


>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 584 SIQILDSHCVRERRGQAAGAVRRLR 658
           S+ +LD  CVR+ RG   G ++RLR
Sbjct: 730 SLLLLDKFCVRKTRGFDIGQLKRLR 754


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,367,010
Number of Sequences: 37544
Number of extensions: 452596
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)