Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_I01
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71266-10|CAA95838.3| 491|Caenorhabditis elegans Hypothetical p... 68 9e-12
DQ904352-1|ABI78934.1| 564|Caenorhabditis elegans malignant bra... 41 0.001
AC024792-4|AAF60679.2| 544|Caenorhabditis elegans Hypothetical ... 41 0.001
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 30 2.1
U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna synt... 29 2.8
AC006637-3|AAP40533.1| 156|Caenorhabditis elegans Hypothetical ... 29 3.7
AC006637-2|AAK85477.2| 160|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81454-1|CAB03803.1| 320|Caenorhabditis elegans Hypothetical pr... 29 4.9
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 6.5
AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical ... 28 6.5
AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z71266-10|CAA95838.3| 491|Caenorhabditis elegans Hypothetical
protein R06C7.7 protein.
Length = 491
Score = 67.7 bits (158), Expect = 9e-12
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Frame = +3
Query: 138 WNNYL---ETSKSVAVPEELFSHVETSLYNG-IKQNMLLE-VCHR--NNPD---VYWIAE 287
W +YL E K+ +P E F+ T +N +K+ ++ E V H N D V W A
Sbjct: 24 WESYLHQFEKGKTSFIPVEAFNRNLTVNFNECVKEGVIFETVVHDYDKNCDSIQVRWFAR 83
Query: 288 ITMVCGHVLRIKFIGAESDFWCDISNTKVHPLGWCGKYDELIE-----PPDAINEKYGDK 452
I VCG+ + +FIGA++ FW +I + + L D ++ PP AINE+Y +
Sbjct: 84 IEKVCGYRVLAQFIGADTKFWLNILSDDMFGLANAAMSDPNMDKIVYAPPLAINEEYQND 143
Query: 453 IIDIMKNALMDGQSVSIEALN-----NKGLSPIDRIKVGMKVEVQNLIDPYRYWIATVCE 617
+++ + N + DG+ V +L+ K L R KVG ++E+ N + +A + E
Sbjct: 144 MVNYVNNCI-DGEIVGQTSLSPKFDEGKALLSKHRFKVGQRLELLNYSNSTEIRVARIQE 202
Query: 618 NVGGRLLV 641
G R+ V
Sbjct: 203 ICGRRMNV 210
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = +3
Query: 132 FDWNNYLETSKSVAVPEELFSHVETS-LYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGH 308
F W+ YLE + +P +LF + + + K + LE A + V G
Sbjct: 387 FRWDEYLEKESAETLPLDLFKPMPSQERLDKFKVGLRLEAADMCENQFICPATVKSVHGR 446
Query: 309 VLRIKFIGAESDF--WCDISNTKVHPLGWCGKYDELIEPPDAIN 434
++ + F G + +F D+ + + P+GWC + +++PP N
Sbjct: 447 LINVNFDGWDEEFDELYDVDSHDILPIGWCEAHSYVLQPPKKYN 490
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Frame = +3
Query: 336 ESDFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYG-DKIIDIMKNALMDGQSVSIEAL 512
E F I+NT + P+G+ KY+ + PPD + D+ ++ K + +++ ++
Sbjct: 352 EDSFPIHINNTFMFPVGYAEKYNLELVPPDEFKGTFRWDEYLE--KES---AETLPLDLF 406
Query: 513 NNK-GLSPIDRIKVGMKVEVQNLIDPYRYWIATVCENVGGRLL-VRYDGCDEDLQQLW 680
+D+ KVG+++E ++ + ATV ++V GRL+ V +DG DE+ +L+
Sbjct: 407 KPMPSQERLDKFKVGLRLEAADMCENQFICPATV-KSVHGRLINVNFDGWDEEFDELY 463
>DQ904352-1|ABI78934.1| 564|Caenorhabditis elegans malignant brain
tumor repeat protein1 protein.
Length = 564
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = +3
Query: 129 EFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQ-NMLLEVCHRNNPDVYWI--AEITMV 299
+F W YL+ ++ +P+E+ + + + + +LE +N + YWI A + V
Sbjct: 449 KFKWEGYLKEKQAEKIPDEMLRPLPSKERRHMFEFGRVLEAVGQN--ETYWISPASVEEV 506
Query: 300 CGHVLRIKFIGAESDF--WCDISNTKVHPLGWCGKYDELIEPP 422
G + I+F G +S+F D+ + + P GWC ++ + P
Sbjct: 507 HGRTVLIEFQGWDSEFSELYDMDSHDLLPAGWCEFFNFKLRHP 549
Score = 34.3 bits (75), Expect = 0.099
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 261 NPDVYWIAEITMVCGHVLRIKFIG 332
+P++ W E+T VCG + IKF+G
Sbjct: 121 SPEIRWFGEVTAVCGFYVAIKFVG 144
>AC024792-4|AAF60679.2| 544|Caenorhabditis elegans Hypothetical
protein Y48G1A.6 protein.
Length = 544
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = +3
Query: 129 EFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQ-NMLLEVCHRNNPDVYWI--AEITMV 299
+F W YL+ ++ +P+E+ + + + + +LE +N + YWI A + V
Sbjct: 429 KFKWEGYLKEKQAEKIPDEMLRPLPSKERRHMFEFGRVLEAVGQN--ETYWISPASVEEV 486
Query: 300 CGHVLRIKFIGAESDF--WCDISNTKVHPLGWCGKYDELIEPP 422
G + I+F G +S+F D+ + + P GWC ++ + P
Sbjct: 487 HGRTVLIEFQGWDSEFSELYDMDSHDLLPAGWCEFFNFKLRHP 529
Score = 34.3 bits (75), Expect = 0.099
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 261 NPDVYWIAEITMVCGHVLRIKFIG 332
+P++ W E+T VCG + IKF+G
Sbjct: 121 SPEIRWFGEVTAVCGFYVAIKFVG 144
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +3
Query: 519 KGLSPIDRIKVGMKVEVQNLIDPYRYWIATVCENVGGRLLVRYDGCDEDLQQLWIFFSNP 698
+GLS + +K G + E+Q P Y +ATV +N G LLV Y + WI +P
Sbjct: 161 QGLSAL--VKPGQQFELQLEDAPDFYVMATVVKNYRGFLLVEYQNF-----KRWIHMLSP 213
Query: 699 RLXSFGYVTNK 731
G+ N+
Sbjct: 214 YCHEIGWGKNE 224
>U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna
synthetase protein 1 protein.
Length = 918
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +3
Query: 318 IKFIGAESDFWCDISNTKVHPLGWCGK-------YDELIEPPDAINEKYGDKIIDIMKNA 476
+K+ +D D+SN + L +C K YD+L E + I + D+++D A
Sbjct: 577 LKYDVLSTDIPIDVSNAAIEGLHFCNKIWNLAAYYDQLAEKCEVIKDVDSDRLVDEWIMA 636
Query: 477 LMDGQSVSIEALNNK 521
+ +++A NK
Sbjct: 637 RLSTTVSTVDAHMNK 651
>AC006637-3|AAP40533.1| 156|Caenorhabditis elegans Hypothetical
protein F41B4.2b protein.
Length = 156
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 362 GYITPE--ITLCSNELDPKDMTTYH 294
GY+ E TLCS+ +DPKD + +H
Sbjct: 52 GYVLSEPIFTLCSHMIDPKDNSKFH 76
>AC006637-2|AAK85477.2| 160|Caenorhabditis elegans Hypothetical
protein F41B4.2a protein.
Length = 160
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 362 GYITPE--ITLCSNELDPKDMTTYH 294
GY+ E TLCS+ +DPKD + +H
Sbjct: 56 GYVLSEPIFTLCSHMIDPKDNSKFH 80
>Z81454-1|CAB03803.1| 320|Caenorhabditis elegans Hypothetical
protein B0391.3 protein.
Length = 320
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 578 EILHFNLHANFDPVYWR*SFII*SLYGNRLAIHQSIFHYINNLISI-FLIYCIRGLNQFI 402
E+++ +L +PV + S S YG+ ++I S F Y ++ F + I G Q I
Sbjct: 51 ELVYTSLDIFVEPVGFSESLTYCSFYGSAMSIFASHFIYRYGAVNTDFKLKYISGTKQSI 110
Query: 401 IFTTP 387
+F P
Sbjct: 111 LFIAP 115
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 360 SNTKVHPLGWCGKYDELIEPPDAI-NEKYGD-KIIDIMKNALMD-GQSVSIEALNNKGLS 530
SNTK+ P G G D ++ D I + GD K +K+AL+D G+ + + G+S
Sbjct: 293 SNTKLLPAGSGGTIDMDVQAADTITTARLGDTKFTQPVKDALLDSGREALLRRMEIYGVS 352
Query: 531 PIDRIK 548
+ ++
Sbjct: 353 LLSSVE 358
>AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical
protein Y41D4A.6 protein.
Length = 452
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 492 SVSIEALNNKGLSPIDRIKVGMKVEVQN---LIDPYRYW 599
S S+E G+S ++ +K+G+ VE N D +R+W
Sbjct: 213 STSVELPEKAGISSLEGLKIGIPVEYHNECLTEDAWRHW 251
>AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical
protein Y4C6B.5 protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +3
Query: 273 YWIAEITMVCGHVLRIKFIGAESDFW 350
Y+I+ +T++C ++ +GA +D+W
Sbjct: 68 YFISSLTLLCPSLVTTLLLGAATDYW 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,595,007
Number of Sequences: 27780
Number of extensions: 416514
Number of successful extensions: 1042
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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