Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H18
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.8  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 114 GTPLIATHTIVVTYWYSFSVYSW 46
           G  + AT   VV YW ++S Y W
Sbjct: 16  GALVSATTDKVVCYWGTWSTYRW 38


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 479  NNQCYHLSLWSFCHQRLLEWHLQHKYPTS 393
            N+   HLS WS     +L + ++HK  TS
Sbjct: 1505 NSITLHLSAWSDGGCPMLYFVIEHKKKTS 1533


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 152  TYWAWYTKKTSANMP 196
            T WAWY K     +P
Sbjct: 1405 TNWAWYRKGLGKYLP 1419


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 22  LDRPIRCHPGVYRETVPIC 78
           L R +R H G  R   PIC
Sbjct: 362 LQRHLRTHTGEKRFACPIC 380


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 509 HQSLQHGHLLNNQCYH 462
           +Q+ +H +  NN+ YH
Sbjct: 32  NQNTEHNYTHNNEMYH 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,539
Number of Sequences: 336
Number of extensions: 4225
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)