Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H18
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    30   0.28 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   2.6  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.6  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 211 FMRYKWHIS*CFLSIPCPICLLCEWIMDDSYYWHSSYSNTYHCCNILVQFLCILL 47
           F+  KW  +   +SI   I L C   + DS+ +H + S+TY    +   FL IL+
Sbjct: 693 FLGLKWKQA--NMSIITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAILI 745


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 131 HYPFTQQTYWAWYTKKTSANMP 196
           HYP   QT W+ YT+    N P
Sbjct: 807 HYPHAGQTVWSVYTRDYRINNP 828


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 464 DNIDYSADGHVAVTDGILVTRYDHDYYLKKMPS 562
           DNI+YS      + + + ++ YD D +L + PS
Sbjct: 15  DNINYSEKRPTMLPENLSLSNYDMDSFLGQFPS 47


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 65  LYQYVTTMVCVAIRGVPIIGVIHYPFTQQTYWAWYTKKTSANMPLVPHKEEN 220
           LY   T     A   +PI   +H P +++  W   T   ++NMP   H+  +
Sbjct: 157 LYAGPTFTHSPAASNLPIPTFLHSPVSEKAEWQPPTGSVNSNMPFQFHQSSS 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,916
Number of Sequences: 5004
Number of extensions: 68524
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)