Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H10
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   182   2e-46
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   175   2e-44
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    30   1.5  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   2.7  
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    27   8.1  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  182 bits (443), Expect = 2e-46
 Identities = 95/159 (59%), Positives = 113/159 (71%), Gaps = 2/159 (1%)
 Frame = +3

Query: 12  LRNHAKRVVQTS-VFTLSHTYXPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRFNGGVGR 188
           LR H K +V    V   S+T   A A+RK PL +A RYL++VI  K+ IPFRR+ GGVGR
Sbjct: 22  LRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGR 81

Query: 189 CAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRR 365
            AQ K   +  QGRWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRR
Sbjct: 82  TAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRR 141

Query: 366 TYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 482
           TYRAHGRINPYMSSPCH+E+ LSE+E+AV +   T  AP
Sbjct: 142 TYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 2  PDHPAXSCKARGSNLRVHFKSHIXAR 79
          P +P  S KA G +LRVHFK  + AR
Sbjct: 8  PSNPTKSAKAMGRDLRVHFKVIVFAR 33


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  175 bits (426), Expect = 2e-44
 Identities = 86/133 (64%), Positives = 102/133 (76%), Gaps = 1/133 (0%)
 Frame = +3

Query: 63  HTYXPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKK 239
           +T   A AIRK PL +A RYL++VI  K+ IPFRR+ GGVGR AQAK +    QGRWP K
Sbjct: 28  NTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAK 87

Query: 240 SAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHI 419
           SA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 420 EVCLSEREDAVAR 458
           E+ LSE+E+ V +
Sbjct: 148 ELILSEKEEPVKK 160



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 5  DHPAXSCKARGSNLRVHFKS 64
          ++P  S KA G +LRVHFK+
Sbjct: 9  NNPTKSSKAMGRDLRVHFKN 28


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 162  RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 335
            R  +G V RC           R  K   EF  Q+ + +E  S  + + L +  + I H+ 
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068

Query: 336  VNRAPCLR 359
             + APCLR
Sbjct: 1069 GSSAPCLR 1076


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 123 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 290
           L N++E  E     R     GR A+  Q     +  RWP ++AE      RN E NA+  
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456

Query: 291 -NKTLDVDRLVIDHIQ 335
            ++T++ D    DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472


>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 476 CPSEEKAFQEKACASKGEDDE 538
           C  EE+A  EK C   GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,381
Number of Sequences: 37544
Number of extensions: 312705
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)