Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H10
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   201   2e-52
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   116   2e-33
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    30   1.4  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  201 bits (491), Expect = 2e-52
 Identities = 96/139 (69%), Positives = 113/139 (81%)
 Frame = +3

Query: 63  HTYXPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKS 242
           +T+  AMA+R  PLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRWP KS
Sbjct: 30  NTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRWPVKS 89

Query: 243 AEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIE 422
           A+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIE
Sbjct: 90  ADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIE 149

Query: 423 VCLSEREDAVARVAPTDDA 479
           V L+E+ED V++  PTDDA
Sbjct: 150 VILAEKEDVVSK--PTDDA 166



 Score = 35.9 bits (79), Expect = 0.021
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 2  PDHPAXSCKARGSNLRVHFKS 64
          P++   SCKARGS+LRVHFK+
Sbjct: 10 PENSTKSCKARGSDLRVHFKN 30


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  116 bits (278), Expect(2) = 2e-33
 Identities = 56/75 (74%), Positives = 63/75 (84%)
 Frame = +3

Query: 255 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 434
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 435 EREDAVARVAPTDDA 479
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138



 Score = 44.0 bits (99), Expect(2) = 2e-33
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = +3

Query: 63  HTYXPAMAIRKXPLRRAVRYLKNVIEKKECIPFRRF 170
           +T+  AMA+R  PLRRA  +L +V E KE +PFRRF
Sbjct: 30  NTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 35.9 bits (79), Expect = 0.021
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 2  PDHPAXSCKARGSNLRVHFKS 64
          P++   SCKARGS+LRVHFK+
Sbjct: 10 PENSTKSCKARGSDLRVHFKN 30


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 552 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 391
           L+S   +   F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 228 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 389
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 390 NPYMSSPCHIEVCLSER 440
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 417 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 289
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,556
Number of Sequences: 27780
Number of extensions: 252258
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)