Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H09
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   4.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.6  

>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 427 HTALTLRHDAAQTHLARPPLTTQRRPAPQDIP 332
           H A T  +DA +   A+P    +  P P + P
Sbjct: 259 HPAETSMNDANRNDCAKPLTQIRNIPGPPETP 290


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 376 PPLTTQRRPAPQDIPAHDSAQALHGTP 296
           PP      P P D+P   S +++   P
Sbjct: 47  PPEEEAASPTPGDVPTPSSPRSISEDP 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,105
Number of Sequences: 336
Number of extensions: 2236
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)