Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H09
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    27   2.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    24   2.6  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 402 TPRKHTWRDRLSPRNGVRRRKTFRHMI-LHKH-YTVLLP 292
           T   H W DRLSP     + K F H   +++H  T L P
Sbjct: 618 TQLMHQWGDRLSPSQVAEKVKRFFHYYGINRHKMTTLTP 656


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -2

Query: 376  PPLTTQRRPAPQDIP---AHDSAQALHGTPPERTL*KNISPLS*SLGLQ-AAGDREAPVQ 209
            PP++  R   PQ  P   A  S+ A+   P   +  ++ +  S S  L   AGDR     
Sbjct: 1062 PPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTYPAGDRSHIPG 1121

Query: 208  HSARVMRNADTELQRPARSIPTQ 140
            +   +    + ELQR ++S+P Q
Sbjct: 1122 NLRPIYEMLNAELQRVSQSLPPQ 1144


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.8 bits (49), Expect(2) = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 468 VICTASGKSARRCRTPRSLCG-TTPRK 391
           ++  A G  +R C T R++CG  T RK
Sbjct: 493 ILDEAHGIKSRTCNTARAVCGLRTTRK 519



 Score = 21.0 bits (42), Expect(2) = 2.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 561 LHRNERHRTSLDKVHG 514
           LH+ E +R  LD+ HG
Sbjct: 484 LHQMEFYRIILDEAHG 499


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 456 ASGKSARRCRTPRSLCGTTPRKHTWRDRLSPRNGVRRRKTFRHMILHK 313
           A   S  R  +P  L  T  R+ T    ++P + ++R +TF  +ILHK
Sbjct: 203 ADSSSPLRKLSPIELPVTPIRRKT--PTINPNSELKRLQTFGKLILHK 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,229
Number of Sequences: 5004
Number of extensions: 35185
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)