Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_H09
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0333 - 4391571-4392289,4393048-4393159 31 0.50
09_06_0081 + 20745627-20748144,20748211-20748308 31 0.66
08_01_0686 + 6049563-6050900 31 0.88
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 31 0.88
12_02_0735 - 22636835-22639502,22639755-22640734 30 1.5
09_02_0113 + 4408171-4409415,4409902-4409907 29 2.0
03_05_0786 + 27691451-27691688,27692376-27692479,27692600-276926... 29 2.7
12_01_0326 - 2520743-2520926,2521019-2521107,2522039-2522500 29 3.5
08_02_1012 + 23550314-23551504 28 4.7
03_05_1099 - 30401847-30402197 28 4.7
11_01_0625 + 5030571-5031016,5031333-5031627 28 6.2
09_02_0445 + 9446171-9447496 28 6.2
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.2
11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 27 8.2
09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303... 27 8.2
05_04_0286 + 19833114-19834053,19834149-19834165 27 8.2
03_02_0576 - 9587698-9588636 27 8.2
>04_01_0333 - 4391571-4392289,4393048-4393159
Length = 276
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 171 SSVSALRMTRAECCTGASRSPAAWSPKDY 257
S+ A R R CCTGA SPAA P DY
Sbjct: 210 SACDAYRSARY-CCTGAYGSPAACGPTDY 237
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 439 PSLPHTALTLRHDAAQT---HLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 293
P +P T+L LR A H+ PP+ T PAP A ++H TPP
Sbjct: 485 PHVPTTSLALRSPAPHLRVRHMPAPPVPTPPAPAPPVSTLPSPAPSVH-TPP 535
>08_01_0686 + 6049563-6050900
Length = 445
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 77 AAACYRWRRMPARAALCARRGPP 9
AAAC RW R+ A AL RR PP
Sbjct: 37 AAACKRWLRLIADQALLRRRWPP 59
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 433 LPHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 293
LPH + + + ++ PP ++ RPAP A + + HG PP
Sbjct: 118 LPHPSPRVSSSSPRSPTPSPPSSSPPRPAPVVAAAEEPRSSGHGKPP 164
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 312 HYTVLLPREPCRRIFR-RYRNPWGSRRREIERPQYSIQRGSCVTQTLNCSAR 160
HYTV +P P R + E+ RPQ S G+ T LNC+ R
Sbjct: 81 HYTVHIPPTPDRATASVASEAEAAAEAEEVHRPQRSYISGTIFTGGLNCATR 132
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 77 AAACYRWRRMPARAALCARRGPP 9
A AC+RWRR AR CA+ PP
Sbjct: 47 ALACHRWRRAAAR---CAKGAPP 66
>03_05_0786 +
27691451-27691688,27692376-27692479,27692600-27692671,
27693231-27693404,27693603-27693726,27695154-27695200,
27695381-27695593
Length = 323
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 400 AAQTHLARPPLTTQRRPAPQDI---PAHDSAQALHG 302
+AQTH P LT R P P +I P + +A+ HG
Sbjct: 139 SAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHG 174
>12_01_0326 - 2520743-2520926,2521019-2521107,2522039-2522500
Length = 244
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 135 ICWVGMDRAGRCS--SVSALRMTRAECCTGASRSPAAWSPKDYDSGEI 272
ICWV D GR S SV + E A+ A +S DY SG I
Sbjct: 67 ICWVTDDDDGRSSPPSVVEYGTSPGEYTASATGDHATYSYSDYKSGAI 114
>08_02_1012 + 23550314-23551504
Length = 396
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 140 ADPGCCRAHEHERQHEQRQSRAAACYRWRRMPARAALCARRGP 12
A P CC HE+ R +E R +C R P AA A P
Sbjct: 227 ACPSCCNLHEYTRSYEARTLLCPSC----RKPFFAAAMATPPP 265
>03_05_1099 - 30401847-30402197
Length = 116
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -3
Query: 315 KHYTVLLPREPCRRIFRRYRNPWGSRRREIERPQYSIQRGSCVTQTLNCSARRGPFPPSR 136
+HY V E CR + + +R RE++ P+ + Q G C C + PP
Sbjct: 17 RHYIV--EAERCRDCLESAKEEYWARGRELQVPRSAPQGGGCRGAHQGCRLQCRQAPPRS 74
Query: 135 S 133
S
Sbjct: 75 S 75
>11_01_0625 + 5030571-5031016,5031333-5031627
Length = 246
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 442 CPSLPHTALTLRHDAAQTHLARPPLTTQRRPA--PQDIPAHDSAQALHGT 299
CPSLP T+ T A +H R + + A QD+P D A GT
Sbjct: 98 CPSLPPTSWTFPSHAQASHHQRVGVASLATAACLGQDMPGLDDAVGGRGT 147
>09_02_0445 + 9446171-9447496
Length = 441
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 77 AAACYRWRRMPARAALCAR 21
AAAC RWRR+ A A AR
Sbjct: 56 AAACKRWRRLVADAGFLAR 74
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 6.2
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 1/154 (0%)
Frame = -2
Query: 574 MHRLPPPQRTPSHES*QGPW*XTTKCLAGLRQACRRNLHSER*VCPSLPHTALTLRHDAA 395
M R+ T S S GP + C N P++P +LT +
Sbjct: 1 MIRISSSPATASASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVP-PSLTTTSSPS 59
Query: 394 QTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPLS*SLGLQAAGDREAP 215
+ + PPL +P P +P + + H TPP P S + A+ P
Sbjct: 60 SSPSSPPPLPP-LQPTPPPLPPTTLSCSSHPTPP--------PPPSPTTSPSASSLPPVP 110
Query: 214 VQHSARVMR-NADTELQRPARSIPTQQIPAAAGR 116
SA + +A T Q P R + + P A R
Sbjct: 111 TPRSASSSKCSAPTSAQTPTRFLSSSSPPPDAPR 144
>11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836
Length = 661
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 442 RLTARCANYADKPVASQLSTWSXITMDLVKTRAMAFVAVEAXGAF 576
R R +AD+P+ S S +T L TRA+A + + GAF
Sbjct: 254 RRALRAPEHADRPMLGSFSACSNVTGVLTDTRAVARL-LHQHGAF 297
>09_04_0465 +
17827224-17827997,17828711-17829024,17829949-17830397,
17830641-17830756
Length = 550
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Frame = -2
Query: 436 SLPHTALTL------RHDAAQTHLAR--PPLTTQRRPAPQ-DIPA 329
SLPHT+L+L H A T L R PPL + P P+ D PA
Sbjct: 33 SLPHTSLSLSSHHHHHHRLAPTPLRRRIPPLLASQTPNPEADSPA 77
>05_04_0286 + 19833114-19834053,19834149-19834165
Length = 318
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 402 SCRRVSAVCGSDGQTYRSLC 461
+CR VCG DG ++ LC
Sbjct: 254 ACRATGGVCGHDGDSHGDLC 273
>03_02_0576 - 9587698-9588636
Length = 312
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 113 EHERQHEQRQSRAAACYRWRRMPARAALCARRGPP 9
EH QR+S + +WR PA AA AR PP
Sbjct: 213 EHAASVRQRKSFSGVI-KWRPPPAPAAAAARPPPP 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,927
Number of Sequences: 37544
Number of extensions: 339020
Number of successful extensions: 1333
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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