Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_H09
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 39 0.002
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 39 0.002
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 35 0.036
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 31 0.78
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 31 0.78
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 31 0.78
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 31 0.78
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 29 1.8
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 29 1.8
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 29 1.8
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 29 1.8
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 29 3.2
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 29 3.2
Z81557-5|CAB04533.1| 345|Caenorhabditis elegans Hypothetical pr... 28 4.2
L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin pro... 28 4.2
AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (... 28 4.2
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine re... 28 5.5
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 27 9.6
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 27 9.6
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQ 530
VCGSDG+TY + C+L+ AC K++ V Y+ C+
Sbjct: 475 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYNSACE 509
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDSC 539
VCG+DG TY S C +++ AC + +K ++ + G C D C
Sbjct: 551 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEGKC-DEC 587
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 405 CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDS 536
C SA VCG+DG+TY + C L+ AC K K ++V G C ++
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAAC-KEQKDILVWKRGNCDEA 366
Score = 34.3 bits (75), Expect = 0.063
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQAC 482
VCGSDG TY +LC+L+ AC
Sbjct: 880 VCGSDGTTYSNLCELKMFAC 899
Score = 33.9 bits (74), Expect = 0.084
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 399 ASCRRVS-AVCGSDGQTYRSLCKLRRQAC--RKPAKHLVVXYHGPCQ 530
A CR V+ VCGSD +Y S C L ++C K L V GPC+
Sbjct: 167 ARCRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPCK 213
Score = 33.9 bits (74), Expect = 0.084
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 417 SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDSC 539
S VC S G Y+S C LR AC ++ V + G C D C
Sbjct: 258 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFGRC-DPC 296
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPA 494
+CG +G Y SLC L+ +C+K A
Sbjct: 619 ICGENGVLYPSLCHLQLASCQKGA 642
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPC 527
VC ++G+T+ + C++++++C + + V + G C
Sbjct: 404 VCATNGETFDNECEMKKKSCETKSM-IKVKHQGTC 437
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACR 485
+CGSDG Y + C L +CR
Sbjct: 694 ICGSDGIVYNNQCHLNTISCR 714
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQ 530
VCGSDG+TY + C+L+ AC K++ V Y+ C+
Sbjct: 483 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYNSACE 517
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDSC 539
VCG+DG TY S C +++ AC + +K ++ + G C D C
Sbjct: 559 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEGKC-DEC 595
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 405 CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDS 536
C SA VCG+DG+TY + C L+ AC K K ++V G C ++
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAAC-KEQKDILVWKRGNCDEA 374
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQD 533
VCGSDG TY +LC+L+ AC K +V G C D
Sbjct: 819 VCGSDGTTYSNLCELKMFAC-KHQIDVVPVSMGICDD 854
Score = 33.9 bits (74), Expect = 0.084
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 399 ASCRRVS-AVCGSDGQTYRSLCKLRRQAC--RKPAKHLVVXYHGPCQ 530
A CR V+ VCGSD +Y S C L ++C K L V GPC+
Sbjct: 175 ARCRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPCK 221
Score = 33.9 bits (74), Expect = 0.084
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 417 SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDSC 539
S VC S G Y+S C LR AC ++ V + G C D C
Sbjct: 266 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFGRC-DPC 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPA 494
+CG +G Y SLC L+ +C+K A
Sbjct: 627 ICGENGVLYPSLCHLQLASCQKGA 650
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPC 527
VC ++G+T+ + C++++++C + + V + G C
Sbjct: 412 VCATNGETFDNECEMKKKSCETKSM-IKVKHQGTC 445
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDSCD 542
+C SD TY +LC+ R+Q C L V + G C + D
Sbjct: 597 ICASDFSTYENLCQFRKQKCLD--SELEVLFKGKCSECLD 634
Score = 34.3 bits (75), Expect = 0.063
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQDS 536
+CG++G T+ + C L+++ C + V Y G C D+
Sbjct: 779 LCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDT 816
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 414 VSAVCGSDGQTYRSLCKLRRQACRKPAKHLVVXYHGPCQD 533
+ VCG+D TY +LC LR ++ + L+ Y+G C D
Sbjct: 25 IRPVCGTDNVTYNNLCFLR--CVQRTNEDLLFFYNGTCCD 62
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 417 SAVCGSDGQTYRSLCKLRRQAC---RKPAKHLVVXYHGP-CQDSCD 542
S VC ++G T+ ++C + + AC +K K + V Y G C CD
Sbjct: 930 SPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQPCD 975
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 405 CRRVSAVCGSDGQTYRSLCKLRRQACRKPA---KHLVVXYHGPC 527
C AVC S+GQT+ + C +++ C K L + + G C
Sbjct: 1024 CESSGAVCDSEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGEC 1067
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Frame = +3
Query: 399 ASCRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKH-----LVVXYHGPC 527
ASC + VC S G+T+ SLC C H L + Y G C
Sbjct: 1071 ASCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKC 1119
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 542 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 592
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 833 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 883
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 848 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 898
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 848 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 898
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 542 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 592
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 833 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 883
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 848 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 898
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 430 PHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPL 260
P + TLRH Q+ + P ++ P P P HD A GTPP R + + PL
Sbjct: 848 PASIQTLRH---QSVMFPPDVSIPPPPIP---PTHDEMMAPRGTPPSRRSSETMVPL 898
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRK 488
VCG+DGQ +R C Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQACRK 488
VCG+DGQ +R C Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 366 PRNGVRRR-KTFRHMILHKHYTVLLPREPCRRIFRRYRNPWGSRRR 232
PR +++R KT R + HY +LP + R F ++RN R R
Sbjct: 591 PRRPIKKRVKTQRTKTIKLHYGDVLPADEVNRKFPKFRNRNAHRAR 636
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 146 HPADPGCCRAHEHERQHEQRQSRAAACYRWRRMPAR 39
HP R + +R E R RA + Y +RR+P R
Sbjct: 941 HPNYVSLDRRDDRDRDREGRYRRAGSSYEYRRLPER 976
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 433 LPHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 293
+P +R A ++A PP R P P P H + Q++ PP
Sbjct: 453 IPMQQQQMRQGAGLPNMAMPPPPLMRHPGPHQNPIH-AMQSMQVQPP 498
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 433 LPHTALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 293
+P +R A ++A PP R P P P H + Q++ PP
Sbjct: 453 IPMQQQQMRQGAGLPNMAMPPPPLMRHPGPHQNPIH-AMQSMQVQPP 498
>Z81557-5|CAB04533.1| 345|Caenorhabditis elegans Hypothetical
protein F59A1.10 protein.
Length = 345
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 378 DRLSPRNGVRRRKTFRHMILHKHYTVLLP 292
DR SPR G R FR++ LHK + P
Sbjct: 71 DRESPRRGGYRDNWFRNLSLHKWFAEYFP 99
>L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin
protein.
Length = 264
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQAC 482
VC ++ QT+ SLC L R+ C
Sbjct: 91 VCANNNQTFTSLCDLYRERC 110
>AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin
(sparc) related protein1 protein.
Length = 264
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 423 VCGSDGQTYRSLCKLRRQAC 482
VC ++ QT+ SLC L R+ C
Sbjct: 91 VCANNNQTFTSLCDLYRERC 110
>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
protein C25F9.2 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 396 RKHTWRDR-LSPRNGVRRRKTFRHMILHKHY 307
+KH+ R + + PR GVR R+ R++++ K +
Sbjct: 289 KKHSLRGKGILPRRGVRNRENIRNVLMEKMF 319
>AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine
receptor, class j protein45 protein.
Length = 328
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 250 RITIAAKYSSTRFSREEYRVMLVQNHVPECLA-APDAVAW 366
++T+ ++RF E R ++VQ +P C++ +P + W
Sbjct: 227 KMTVRTSQKTSRFQFELLRALIVQTVIPICISFSPCLLCW 266
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 508 TTKCLAGLRQACRRNLHSER*VCPSLPHTALTLRHDAAQTHLARPPLTTQRRPAP 344
+T+C +Q+CR+ S V P + T + PP TT PAP
Sbjct: 77 STQCAPACQQSCRQQCQSAPAVSQCQPMCQQQCQSQC--TPMYNPPATTTTTPAP 129
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 508 TTKCLAGLRQACRRNLHSER*VCPSLPHTALTLRHDAAQTHLARPPLTTQRRPAP 344
+T+C +Q+CR+ S V P + T + PP TT PAP
Sbjct: 77 STQCAPACQQSCRQQCQSAPAVSQCQPMCQQQCQSQC--TPMYNPPATTTTTPAP 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,652
Number of Sequences: 27780
Number of extensions: 234087
Number of successful extensions: 810
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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