Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H09
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              30   0.019
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.10 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 408 RRVSAVCGSDGQTYRSLCKLRRQAC 482
           RR   VC S+G+ Y + C+L R AC
Sbjct: 112 RRHRPVCASNGKIYANHCELHRAAC 136


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 407 PQSERGVRQRRADLPLAVQITPTSLSQAS*ALGRXLPWTL 526
           PQS+     R A+ P++VQ+ P + S  + AL    P  L
Sbjct: 445 PQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLL 484


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = -3

Query: 456 ASGKSARRCRTPRSLCGTTPRKHTWRDRLSPRNGVRRRKTFRHMILHKHYTVLLPREPCR 277
           A+  ++ R RT      T+ R    R     RN   R+K  R+  LH     LL     R
Sbjct: 211 ATSSNSLRNRT-HGFQHTSSRYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSR 269

Query: 276 RIFRRYR 256
           + + R R
Sbjct: 270 KRYSRSR 276


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = -3

Query: 456 ASGKSARRCRTPRSLCGTTPRKHTWRDRLSPRNGVRRRKTFRHMILHKHYTVLLPREPCR 277
           A+  ++ R RT      T+ R    R     RN   R+K  R+  LH     LL     R
Sbjct: 216 ATSSNSLRNRT-HGFQHTSSRYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSR 274

Query: 276 RIFRRYR 256
           + + R R
Sbjct: 275 KRYSRSR 281


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = -2

Query: 406 HDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 293
           H  A  +    P   Q +P   +   +   Q  HG+PP
Sbjct: 242 HLEAHCYFDIEPTVQQHQPVTVNRQLNSDVQPGHGSPP 279


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 228 SPAAWSPKDYD 260
           SP  WSP D D
Sbjct: 516 SPTTWSPADLD 526


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 363 RNGVRRRKTFRHMILHKHYTVLLPREPCRRIFRRYR-NPWGSRRREIERPQY 211
           RN   R+K  R+  LH     LL     R+ + R R     S + E E  +Y
Sbjct: 8   RNREYRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKY 59


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 382 ARPPLTTQRRPAPQDIPA 329
           A PP+   R  APQ IPA
Sbjct: 54  ALPPVGKFRFKAPQKIPA 71


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = -2

Query: 421 ALTLRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHG 302
           +LTL       HLA    T    P P  +P   +     G
Sbjct: 29  SLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAG 68


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 382 ARPPLTTQRRPAPQDIPA 329
           A PP+   R  APQ IPA
Sbjct: 54  ALPPVGKFRFKAPQKIPA 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,985
Number of Sequences: 438
Number of extensions: 2909
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)