Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H04
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.091
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.4  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   3.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   3.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   3.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.4 bits (53), Expect(2) = 0.091
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +1

Query: 379 GGVRTNGACLEPRS--IAKAPPGEGCPRCGG 465
           G    NG CL+       K PPG   PRC G
Sbjct: 267 GACHNNGTCLDKVGGFECKCPPGFVGPRCEG 297



 Score = 20.6 bits (41), Expect(2) = 0.091
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 199 CFKCGLCQKLLDSTNCSEHEGEL 267
           C   G C  L++S +CS   G L
Sbjct: 231 CQNGGTCHDLVNSFSCSCPSGTL 253


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 520 TPCATPDREPTSALQRTHSHRSEDSPRREEL 428
           TPCA+P+R+P     + H  R E S  +  L
Sbjct: 131 TPCASPNRKPDD--NQDHLRRLEMSLEKSGL 159


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 192 VPFEATSHALLSGVN*FATFRALRVISGFERHCARLTXPVRRVG 61
           V F  T  ALL G   + T   L +I+    +CA      R VG
Sbjct: 141 VVFLLTLSALLEGFTLYHTTAYLHIITMINMNCALWYINCRAVG 184


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 192 VPFEATSHALLSGVN*FATFRALRVISGFERHCARLTXPVRRVG 61
           V F  T  ALL G   + T   L +I+    +CA      R VG
Sbjct: 141 VVFLLTLSALLEGFTLYHTTAYLHIITMINMNCALWYINCRAVG 184


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 192 VPFEATSHALLSGVN*FATFRALRVISGFERHCARLTXPVRRVG 61
           V F  T  ALL G   + T   L +I+    +CA      R VG
Sbjct: 141 VVFLLTLSALLEGFTLYHTTAYLHIITMINMNCALWYINCRAVG 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,740
Number of Sequences: 336
Number of extensions: 3079
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)