Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H03
         (734 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   1.1  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   2.4  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           24   5.6  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    23   7.4  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.8  

>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 468 FLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMD 584
           F V L T    YS+   EW+PPA      + D++++  D
Sbjct: 124 FEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVEYFPFD 162


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 537 PQPFKVQSDL---QWYLMDPDAYDQFLVGIGTGVALQVWQ 647
           P P  ++ D    Q YL DP+A    +      V L+VWQ
Sbjct: 842 PHPLLIKEDARCHQRYLADPEASRAVIRREERAVTLEVWQ 881


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 497 LKVREKIH*KCVLFI*FTVVRR---FHGFGGILGVTVFQENV 381
           LK R+ IH   VLF+          FH  G ILG+ VF  +V
Sbjct: 573 LKQRKTIHFFPVLFLAAINPEHLSYFHFVGRILGIAVFHNHV 614


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 478 FTKNVCCLSNLQLFVAFTASAAFWGLLYSRK 386
           F+ ++CC  ++   VAFT    F  +LY  K
Sbjct: 197 FSSSLCCFLSVWFVVAFTVE-RFIAVLYPLK 226


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 682  LSCNSRGSGNAFCHTWRATP 623
            LS N R  GN+  H+ R+TP
Sbjct: 1347 LSSNVRSLGNSPVHSGRSTP 1366


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 762,053
Number of Sequences: 2352
Number of extensions: 15295
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)