Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_H03
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 108 5e-24
AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical... 79 4e-15
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.013
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.069
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.48
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.48
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 1.1
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 2.0
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical p... 29 3.4
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 28 6.0
Z68216-5|CAA92464.1| 428|Caenorhabditis elegans Hypothetical pr... 28 7.9
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 7.9
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 28 7.9
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 28 7.9
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 7.9
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 7.9
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 7.9
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 108 bits (259), Expect = 5e-24
Identities = 64/188 (34%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Frame = +3
Query: 195 DILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLT 374
D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P + G
Sbjct: 32 DVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPEGGC 91
Query: 375 TGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKV 554
G + E+++ ++A AVK+ N DK HTF F D ++ W P Q +
Sbjct: 92 LGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQAYND 151
Query: 555 QSDLQWYLMDPDAYDQFLV-----GIGT-GVALQVWQN--ALPEPLLLQERPNWTETYAV 710
DL W+L + DQF + G+ T GV + N L ER NWTET
Sbjct: 152 VGDLWWWLQNERCRDQFAISHDKLGVPTVGVFTNMKGNDPELAGDADKAERANWTETVFT 211
Query: 711 WSPLXTYL 734
WSP +YL
Sbjct: 212 WSPHGSYL 219
>AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical
protein Y54E2A.11b protein.
Length = 193
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/116 (33%), Positives = 58/116 (50%)
Frame = +3
Query: 195 DILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLT 374
D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P + G
Sbjct: 32 DVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPEGGC 91
Query: 375 TGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQ 542
G + E+++ ++A AVK+ N DK HTF F D ++ W P Q
Sbjct: 92 LGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQ 147
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +3
Query: 294 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 455
+ + K+F+KFG I + T E G + G+ F+ ++NP+ A AV+A ++ ++
Sbjct: 226 KETLEKVFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIE 278
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 473
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 34.7 bits (76), Expect = 0.069
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 267 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNC 446
VG E +S + + F +GKI E G GY F+EYS+ A K +
Sbjct: 108 VGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGI 167
Query: 447 KLD 455
K+D
Sbjct: 168 KVD 170
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 294 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 455
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 443
FS FG I + ENG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 473
FS FG I++ T + G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 294 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 455
Q ++ +FSKFG+I + T G G+ F+ +++ A +AV+ N+ L+
Sbjct: 251 QEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILE 304
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 443
FS FG I + ENG + G+ F+ + P+ A AV N+
Sbjct: 363 FSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 473
FS FG I++ T + G + GY F+ + +A A++ N L + ++
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 443
VG + + I IFSK G +++ + E G GY F+E+ + Q A A++ N
Sbjct: 22 VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
Query: 444 CKL 452
+L
Sbjct: 82 YEL 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 285 EKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 452
E + ++ FS++GKI N + G GY +EY + A EA+ +N+ L
Sbjct: 65 EATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 291 LQSVINKIFSKFGKIVNEYYPTTE--NGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 455
L++ + +IFS +G I N P N + GY ++EY N ++A +++K + ++D
Sbjct: 145 LKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQID 201
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 473
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 77 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 315 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 473
FS FG I++ E+G + GY F+ + + A A++ N L + F+
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 267 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 443
VG + + + +F K GKI + +G + GY F+ Y N ++AA A K +
Sbjct: 204 VGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDG 263
Query: 444 CKLDKQHTFLVNL 482
++ VN+
Sbjct: 264 HEISTGKPLKVNV 276
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 276 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 455
+RL +QSVIN I S F IVNE + + G+ F +S+ + +
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVERVIYTISMETFSTSS 126
Query: 456 KQHTFLVNL 482
+ L NL
Sbjct: 127 QDFLMLFNL 135
>Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical
protein F59A1.11a protein.
Length = 303
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 276 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 455
+RL +QSVIN I S F IVNE + + G+ F +S+ + +
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVERVIYTISMETFSTSS 126
Query: 456 KQHTFLVNL 482
+ L NL
Sbjct: 127 QDFLMLFNL 135
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 267 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 443
VG + ++ F+KFG++ + + + GY F+ + N QNA A+ N
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNG 198
Query: 444 CKLDKQ 461
+ K+
Sbjct: 199 KWIGKR 204
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 486 TDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQFLVGIGTGVA 632
++ QK SD P PP P P + +L D F+ G G+ A
Sbjct: 629 SELQKISDFPPTPAPPPPYPTPQLAPHDLFLSDDSLVVPFIGGYGSPAA 677
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 486 TDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQFLVGIGTGVA 632
++ QK SD P PP P P + +L D F+ G G+ A
Sbjct: 629 SELQKISDFPPTPAPPPPYPTPQLAPHDLFLSDDSLVVPFIGGYGSPAA 677
>Z68216-5|CAA92464.1| 428|Caenorhabditis elegans Hypothetical
protein F27C8.6 protein.
Length = 428
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 700 VSVQFGLSCNSRGSGNAFCHTWRATPVPM--PTRNWSYASGSIKY 572
+S GL N+ G + H W TPV + PT N + G++ +
Sbjct: 83 LSKTLGLLVNTHGQVDIKWHKWNETPVKVYRPTNNKTSTDGAVLF 127
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 303 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 461
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 307 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 360
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
protein R08E3.1b protein.
Length = 1465
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 368 SILGRGV-VFVDYFTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRF 219
S++G G+ + ++ +F Y Y + ++L + TP +NVF T +F
Sbjct: 725 SLVGNGIPIAINGAKDFENYLTYYVVPLFQSLQYQVNTPQRVFNVFQTGQF 775
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
protein R08E3.1a protein.
Length = 1512
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 368 SILGRGV-VFVDYFTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRF 219
S++G G+ + ++ +F Y Y + ++L + TP +NVF T +F
Sbjct: 725 SLVGNGIPIAINGAKDFENYLTYYVVPLFQSLQYQVNTPQRVFNVFQTGQF 775
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 303 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 461
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 307 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 360
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 303 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 461
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 282 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 335
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 303 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL-DKQ 461
+ ++ FG + G + GY F EY +P +A+ N +L DKQ
Sbjct: 285 VKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQ 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,756
Number of Sequences: 27780
Number of extensions: 352006
Number of successful extensions: 1149
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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